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SPAG16
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:42.7 nTPM
FANTOM5:68.1 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:1.8 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037542
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Hippocampus
nTPM: 33.8
1898 Male, age 80, left hemisphere 36.8
2529 Female, age 94, left hemisphere 33.9
1911 Female, age 85, right hemisphere 33.8
2621 Female, age 67, right hemisphere 33.6
1855 Male, age 76, left hemisphere 32.6
2148 Female, age 91, left hemisphere 32.3
Dentate gyrus
nTPM: 33.1
2530 Female, age 94, left hemisphere 36.0
2010 Male, age 76, both hemispheres 34.9
1927 Female, age 91, both hemispheres 32.2
2531 Female, age 67, both hemispheres 32.1
2246 Female, age 85, both hemispheres 31.9
2528 Male, age 74, both hemispheres 31.2
Entorhinal gyrus
nTPM: 32.2
2117 Female, age 91, right hemisphere 34.5
1938 Female, age 85, left hemisphere 34.0
2686 Male, age 75, right hemisphere 34.0
1787 Male, age 76, left hemisphere 31.6
2764 Male, age 80, right hemisphere 30.7
2613 Female, age 94, left hemisphere 28.5
Hippocampus, CA1
nTPM: 34.2
2045 Male, age 76, both hemispheres 36.3
1873 Female, age 85, both hemispheres 35.1
2082 Female, age 91, right hemisphere 34.1
2749 Male, age 80, left hemisphere 33.6
2527 Male, age 74, both hemispheres 31.6
Hippocampus, CA2
nTPM: 33.3
1892 Male, age 76, both hemispheres 35.0
1963 Male, age 80, left hemisphere 34.9
2249 Male, age 74, both hemispheres 33.6
2437 Female, age 94, left hemisphere 32.5
2113 Female, age 91, right hemisphere 32.4
1940 Female, age 85, left hemisphere 31.2
Hippocampus, CA3
nTPM: 32.4
1867 Male, age 76, both hemispheres 34.2
1891 Female, age 85, both hemispheres 33.9
2137 Male, age 80, left hemisphere 32.9
2861 Female, age 67, both hemispheres 32.0
2620 Female, age 94, left hemisphere 31.3
2436 Male, age 74, both hemispheres 29.9
Parahippocampal cortex
nTPM: 31.4
1933 Female, age 85, both hemispheres 33.1
1850 Male, age 80, both hemispheres 32.5
2018 Male, age 76, both hemispheres 32.0
2692 Male, age 74, both hemispheres 32.0
1990 Female, age 91, right hemisphere 31.7
2245 Female, age 91, both hemispheres 31.2
2622 Female, age 67, right hemisphere 31.2
2532 Female, age 72, left hemisphere 30.9
2250 Female, age 67, right hemisphere 29.9
2693 Female, age 94, both hemispheres 29.5
Perirhinal gyrus
nTPM: 31.3
1841 Female, age 85, right hemisphere 33.0
2848 Male, age 76, right hemisphere 32.6
1794 Male, age 80, right hemisphere 31.1
1847 Female, age 91, left hemisphere 30.8
2521 Female, age 94, right hemisphere 29.1
Subiculum
nTPM: 32.6
1901 Male, age 80, both hemispheres 34.6
2438 Female, age 94, left hemisphere 33.9
1977 Female, age 85, both hemispheres 33.0
2042 Male, age 76, both hemispheres 32.2
2729 Female, age 91, right hemisphere 32.2
2619 Male, age 74, both hemispheres 29.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.7
Samples: 197

Max nTPM: 113.4
Min nTPM: 14.3
Std nTPM: 14.5
Median nTPM: 39.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 113.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 101.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 92.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 89.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 89.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 81.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 78.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 75.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 72.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 69.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 69.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.1
FF:10169-103B7 60 years, female 79.5
FF:10153-102I9 76 years, female 56.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 10.6
Samples: 4

Max nTPM: 14.9
Min nTPM: 7.5
Sample A Female 10.6
Sample B Female 9.2
Sample C Male 14.9
Sample D Male 7.5
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 8.1
Sample C Male 8.7
Sample D Male 6.7
Subiculum
nTPM: 10.7
Samples: 4

Max nTPM: 12.4
Min nTPM: 7.9
Sample A Female 7.9
Sample B Female 12.2
Sample C Male 10.1
Sample D Male 12.4
Ventral hippocampus
nTPM: 11.5
Samples: 4

Max nTPM: 14.4
Min nTPM: 9.7
Sample A Female 14.4
Sample B Female 11.2
Sample C Male 9.7
Sample D Male 10.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.3
Sample C Female 0.4
Sample D Female 0.0
Hippocampal formation
nTPM: 1.8
Samples: 4

Max nTPM: 3.2
Min nTPM: 0.8
Sample A Male 0.8
Sample B Male 1.3
Sample C Female 1.9
Sample D Female 3.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
75080199 Antisense, RP_060412_06_H02, Mouse strain C57BL/6J (56 days, male) 0.2
71891856 Antisense, RP_051005_04_F12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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