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CTDSP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.0 nTPM
HPA:47.0 nTPM
GTEx:31.1 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:19.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.2
2586 Male, age 75, left hemisphere 50.7
2828 Female, age 72, unknown 46.4
1830 Male, age 51, unknown 44.8
1833 Male, age 53, unknown 43.9
1870 Female, age 42, unknown 43.7
2666 Male, age 74, left hemisphere 42.8
2019 Male, age 18, unknown 41.5
2411 Female, age 72, unknown 41.1
2219 Male, age 76, both hemispheres 39.7
1827 Male, age 72, unknown 37.2
Dorsal raphe nucleus
nTPM: 37.9
1828 Male, age 53, unknown 40.6
2016 Female, age 72, unknown 39.9
2750 Male, age 76, both hemispheres 38.0
2047 Male, age 72, unknown 37.0
2298 Female, age 72, unknown 33.9
Inferior colliculus
nTPM: 37.6
1890 Male, age 53, unknown 39.6
2849 Male, age 72, unknown 39.3
1848 Female, age 42, unknown 37.8
2097 Female, age 72, unknown 33.7
Median raphe nucleus
nTPM: 34.1
2220 Male, age 76, midline 34.1
Pedunculopontine tegmental nucleus
nTPM: 38.1
2338 Male, age 61, both hemispheres 41.8
2334 Male, age 80, both hemispheres 37.1
1921 Female, age 85, both hemispheres 35.5
Periaquaductal grey, anterior
nTPM: 37.2
2502 Female, age 75, unknown 38.4
1947 Male, age 18, unknown 37.0
1795 Male, age 51, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 37.8
2464 Female, age 72, unknown 40.0
2850 Male, age 76, both hemispheres 38.9
1831 Male, age 72, unknown 37.9
1840 Male, age 53, unknown 34.4
Periaquaductal grey, lateral
nTPM: 38.7
2053 Male, age 18, unknown 41.7
2140 Male, age 76, both hemispheres 40.2
2272 Male, age 74, both hemispheres 34.2
Pretectal area
nTPM: 36.9
1815 Male, age 53, unknown 41.0
2407 Male, age 75, both hemispheres 40.4
2667 Female, age 75, unknown 39.6
2825 Male, age 18, unknown 38.4
2316 Male, age 76, right hemisphere 38.3
1817 Female, age 42, unknown 37.9
2007 Male, age 72, unknown 36.0
1816 Male, age 51, unknown 33.9
1944 Female, age 72, unknown 33.6
2224 Female, age 72, unknown 33.6
2273 Male, age 74, both hemispheres 33.2
Red nucleus
nTPM: 47.0
1865 Male, age 51, unknown 50.3
1904 Male, age 53, unknown 50.0
2769 Male, age 72, unknown 49.5
1954 Female, age 42, unknown 49.1
2227 Male, age 72, unknown 49.0
2588 Male, age 74, left hemisphere 48.0
2584 Male, age 75, left hemisphere 47.4
1821 Female, age 72, unknown 46.0
2503 Female, age 72, unknown 46.0
2823 Male, age 76, right hemisphere 45.3
2785 Male, age 18, unknown 44.7
2725 Female, age 75, unknown 38.9
Substantia nigra
nTPM: 41.1
2665 Male, age 74, both hemispheres 47.6
2699 Male, age 18, unknown 46.9
2583 Male, age 75, right hemisphere 45.9
2590 Female, age 75, unknown 43.8
1851 Male, age 51, unknown 40.3
2409 Female, age 72, unknown 40.3
1889 Female, age 72, unknown 38.7
1916 Female, age 42, unknown 36.7
2241 Male, age 72, unknown 35.6
1941 Male, age 53, unknown 35.0
Superior colliculus
nTPM: 40.4
1995 Male, age 72, unknown 48.5
2664 Male, age 75, both hemispheres 47.1
1913 Female, age 42, unknown 44.9
1839 Male, age 51, unknown 40.5
2668 Female, age 75, unknown 39.8
2587 Male, age 74, left hemisphere 39.1
1796 Male, age 53, unknown 37.3
1895 Male, age 76, right hemisphere 36.6
2087 Female, age 72, unknown 36.4
2261 Male, age 18, unknown 33.8
Ventral tegmental area
nTPM: 38.9
2410 Female, age 72, unknown 41.0
1942 Male, age 51, unknown 39.1
2021 Male, age 53, unknown 38.8
2223 Female, age 72, unknown 38.7
1915 Female, age 42, unknown 38.3
2218 Male, age 76, both hemispheres 37.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.1
Samples: 139

Max nTPM: 61.1
Min nTPM: 7.8
Std nTPM: 9.1
Median nTPM: 30.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 61.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 53.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 53.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 51.0
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 49.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 45.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 44.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 44.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 44.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.6
FF:10158-103A5 76 years, female 42.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.7
Pig sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 51.7
Min nTPM: 25.8
Sample A Female 51.7
Sample B Female 37.6
Sample C Male 29.7
Sample D Male 25.8
Periaqueductal gray
nTPM: 36.5
Samples: 3

Max nTPM: 40.2
Min nTPM: 31.5
Sample B Female 40.2
Sample C Male 37.8
Sample D Male 31.5
Substantia nigra
nTPM: 42.7
Samples: 4

Max nTPM: 50.0
Min nTPM: 36.1
Sample A Female 40.8
Sample B Female 50.0
Sample C Male 36.1
Sample D Male 43.7
Superior colliculi
nTPM: 40.6
Samples: 4

Max nTPM: 53.0
Min nTPM: 29.1
Sample A Female 45.9
Sample B Female 53.0
Sample C Male 29.1
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.3
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.8
Sample A Male 21.5
Sample B Male 18.6
Sample C Female 19.1
Sample D Female 17.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.