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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.7 nTPM
HPA:17.7 nTPM
GTEx:10.6 nTPM
FANTOM5:14.7 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:6.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2586 Male, age 75, left hemisphere 19.4
2828 Female, age 72, unknown 18.0
2666 Male, age 74, left hemisphere 17.8
2219 Male, age 76, both hemispheres 17.0
1830 Male, age 51, unknown 16.9
2411 Female, age 72, unknown 16.2
1827 Male, age 72, unknown 15.6
1870 Female, age 42, unknown 15.5
1833 Male, age 53, unknown 15.3
2019 Male, age 18, unknown 14.8
Dorsal raphe nucleus
nTPM: 16.0
2047 Male, age 72, unknown 17.8
1828 Male, age 53, unknown 16.8
2016 Female, age 72, unknown 16.8
2298 Female, age 72, unknown 14.9
2750 Male, age 76, both hemispheres 14.0
Inferior colliculus
nTPM: 16.5
1890 Male, age 53, unknown 17.5
2849 Male, age 72, unknown 17.3
1848 Female, age 42, unknown 16.5
2097 Female, age 72, unknown 14.9
Median raphe nucleus
nTPM: 13.8
2220 Male, age 76, midline 13.8
Pedunculopontine tegmental nucleus
nTPM: 15.0
1921 Female, age 85, both hemispheres 16.7
2334 Male, age 80, both hemispheres 14.8
2338 Male, age 61, both hemispheres 13.5
Periaquaductal grey, anterior
nTPM: 17.5
1947 Male, age 18, unknown 18.1
2502 Female, age 75, unknown 18.1
1795 Male, age 51, unknown 16.4
Periaquaductal grey, dorsal
nTPM: 17.3
1840 Male, age 53, unknown 19.0
2464 Female, age 72, unknown 17.2
1831 Male, age 72, unknown 17.0
2850 Male, age 76, both hemispheres 15.8
Periaquaductal grey, lateral
nTPM: 17.6
2053 Male, age 18, unknown 19.5
2140 Male, age 76, both hemispheres 18.3
2272 Male, age 74, both hemispheres 15.0
Pretectal area
nTPM: 16.8
2667 Female, age 75, unknown 18.8
2825 Male, age 18, unknown 17.6
1944 Female, age 72, unknown 17.2
2316 Male, age 76, right hemisphere 17.2
2273 Male, age 74, both hemispheres 16.8
2407 Male, age 75, both hemispheres 16.8
2224 Female, age 72, unknown 16.7
1815 Male, age 53, unknown 16.5
1816 Male, age 51, unknown 16.5
1817 Female, age 42, unknown 15.7
2007 Male, age 72, unknown 15.2
Red nucleus
nTPM: 16.1
1954 Female, age 42, unknown 18.8
2588 Male, age 74, left hemisphere 18.8
2584 Male, age 75, left hemisphere 16.9
2503 Female, age 72, unknown 16.6
1865 Male, age 51, unknown 16.0
2769 Male, age 72, unknown 16.0
1821 Female, age 72, unknown 15.6
1904 Male, age 53, unknown 15.6
2227 Male, age 72, unknown 15.3
2725 Female, age 75, unknown 14.8
2823 Male, age 76, right hemisphere 14.7
2785 Male, age 18, unknown 14.6
Substantia nigra
nTPM: 17.7
1851 Male, age 51, unknown 18.8
2409 Female, age 72, unknown 18.7
2665 Male, age 74, both hemispheres 18.7
2699 Male, age 18, unknown 18.6
2241 Male, age 72, unknown 18.3
1916 Female, age 42, unknown 17.9
2583 Male, age 75, right hemisphere 17.2
2590 Female, age 75, unknown 16.9
1941 Male, age 53, unknown 16.2
1889 Female, age 72, unknown 15.8
Superior colliculus
nTPM: 17.6
2664 Male, age 75, both hemispheres 21.4
2087 Female, age 72, unknown 18.5
1995 Male, age 72, unknown 18.2
1839 Male, age 51, unknown 17.2
2261 Male, age 18, unknown 17.2
2668 Female, age 75, unknown 17.2
1895 Male, age 76, right hemisphere 17.0
1913 Female, age 42, unknown 16.9
1796 Male, age 53, unknown 16.8
2587 Male, age 74, left hemisphere 15.5
Ventral tegmental area
nTPM: 17.3
2021 Male, age 53, unknown 18.2
2223 Female, age 72, unknown 17.9
1942 Male, age 51, unknown 17.6
1915 Female, age 42, unknown 17.2
2410 Female, age 72, unknown 17.0
2218 Male, age 76, both hemispheres 15.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.6
Samples: 139

Max nTPM: 41.9
Min nTPM: 2.7
Std nTPM: 4.4
Median nTPM: 9.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 41.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 25.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 20.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 19.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 19.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 18.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 18.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 17.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 16.0
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 15.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.7
FF:10158-103A5 76 years, female 14.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 3.9
Sample C Male 5.8
Sample D Male 4.7
Periaqueductal gray
nTPM: 3.1
Samples: 3

Max nTPM: 3.6
Min nTPM: 2.6
Sample B Female 3.6
Sample C Male 3.1
Sample D Male 2.6
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 10.4
Min nTPM: 4.1
Sample A Female 5.7
Sample B Female 10.4
Sample C Male 4.6
Sample D Male 4.1
Superior colliculi
nTPM: 7.6
Samples: 4

Max nTPM: 14.0
Min nTPM: 4.1
Sample A Female 7.4
Sample B Female 14.0
Sample C Male 4.1
Sample D Male 5.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.4
Sample A Male 6.4
Sample B Male 5.4
Sample C Female 6.2
Sample D Female 6.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70720257 Antisense, RP_050426_03_G01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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