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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		40.910
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:12.7 nTPM
FANTOM5:24.7 Scaled Tags Per Million
Pig:14.3 nTPM
Mouse:77.3 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017324Antibody CAB018649
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079780
Hippocampal formation mean intensity 40.910
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 1.118
Molecular layer of the dentate gyrus 0.695
Granular dentate gyrus 3.786
CA1 - oriens layer 2.978
CA1 - pyramidal layer 4.112
CA1 - radiatum layer 1.530
CA2 - oriens layer 7.465
CA2 - pyramidal layer 24.682
CA2 - radiatum layer 4.672
CA3 - oriens layer 2.333
CA3 - pyramidal layer 40.910
CA3 - radiatum layer 4.500
Stratum lucidum 3.368
Lacunosum moleculare 0.713
Subiculum 0.825

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Hippocampus
nTPM: 6.6
1911 Female, age 85, right hemisphere 8.3
2621 Female, age 67, right hemisphere 7.0
1855 Male, age 76, left hemisphere 6.6
1898 Male, age 80, left hemisphere 6.6
2529 Female, age 94, left hemisphere 6.4
2148 Female, age 91, left hemisphere 4.7
Dentate gyrus
nTPM: 6.1
2010 Male, age 76, both hemispheres 7.9
2246 Female, age 85, both hemispheres 6.7
1927 Female, age 91, both hemispheres 6.6
2530 Female, age 94, left hemisphere 5.7
2531 Female, age 67, both hemispheres 5.1
2528 Male, age 74, both hemispheres 4.8
Entorhinal gyrus
nTPM: 5.8
1787 Male, age 76, left hemisphere 7.6
1938 Female, age 85, left hemisphere 6.1
2117 Female, age 91, right hemisphere 5.5
2686 Male, age 75, right hemisphere 5.5
2764 Male, age 80, right hemisphere 5.3
2613 Female, age 94, left hemisphere 5.2
Hippocampus, CA1
nTPM: 6.2
2749 Male, age 80, left hemisphere 7.0
1873 Female, age 85, both hemispheres 6.8
2045 Male, age 76, both hemispheres 6.4
2527 Male, age 74, both hemispheres 5.5
2082 Female, age 91, right hemisphere 5.4
Hippocampus, CA2
nTPM: 6.3
1892 Male, age 76, both hemispheres 8.9
1963 Male, age 80, left hemisphere 6.7
2437 Female, age 94, left hemisphere 6.1
2113 Female, age 91, right hemisphere 6.0
1940 Female, age 85, left hemisphere 5.5
2249 Male, age 74, both hemispheres 4.7
Hippocampus, CA3
nTPM: 6.1
1867 Male, age 76, both hemispheres 8.1
1891 Female, age 85, both hemispheres 7.0
2137 Male, age 80, left hemisphere 6.0
2861 Female, age 67, both hemispheres 5.6
2436 Male, age 74, both hemispheres 5.2
2620 Female, age 94, left hemisphere 4.7
Parahippocampal cortex
nTPM: 6.9
2250 Female, age 67, right hemisphere 9.8
2018 Male, age 76, both hemispheres 8.6
2245 Female, age 91, both hemispheres 7.2
2532 Female, age 72, left hemisphere 7.2
2693 Female, age 94, both hemispheres 7.0
1933 Female, age 85, both hemispheres 6.4
1990 Female, age 91, right hemisphere 6.3
1850 Male, age 80, both hemispheres 5.6
2622 Female, age 67, right hemisphere 5.6
2692 Male, age 74, both hemispheres 5.0
Perirhinal gyrus
nTPM: 7.3
2848 Male, age 76, right hemisphere 8.1
1841 Female, age 85, right hemisphere 7.6
2521 Female, age 94, right hemisphere 7.5
1794 Male, age 80, right hemisphere 7.1
1847 Female, age 91, left hemisphere 6.3
Subiculum
nTPM: 6.1
2042 Male, age 76, both hemispheres 6.8
1977 Female, age 85, both hemispheres 6.6
2438 Female, age 94, left hemisphere 6.3
2619 Male, age 74, both hemispheres 6.0
1901 Male, age 80, both hemispheres 5.8
2729 Female, age 91, right hemisphere 4.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.7
Samples: 197

Max nTPM: 57.5
Min nTPM: 0.2
Std nTPM: 10.4
Median nTPM: 9.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 57.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 47.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 44.6
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 44.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 43.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 41.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 38.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 37.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 37.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 33.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 33.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 24.7
FF:10169-103B7 60 years, female 37.6
FF:10153-102I9 76 years, female 11.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 14.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 3.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 3.7
Sample C Male 5.5
Sample D Male 3.0
Entorhinal cortex
nTPM: 14.3
Samples: 4

Max nTPM: 17.8
Min nTPM: 10.0
Sample A Female 15.0
Sample B Female 14.3
Sample C Male 17.8
Sample D Male 10.0
Subiculum
nTPM: 7.4
Samples: 4

Max nTPM: 10.9
Min nTPM: 5.7
Sample A Female 10.9
Sample B Female 6.4
Sample C Male 5.7
Sample D Male 6.7
Ventral hippocampus
nTPM: 4.3
Samples: 4

Max nTPM: 7.1
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 7.1
Sample C Male 4.1
Sample D Male 3.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 77.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 77.3
Samples: 4

Max nTPM: 100.4
Min nTPM: 66.4
Sample A Male 73.4
Sample B Male 100.4
Sample C Female 68.9
Sample D Female 66.4
Hippocampal formation
nTPM: 31.1
Samples: 4

Max nTPM: 50.4
Min nTPM: 19.7
Sample A Male 50.4
Sample B Male 25.6
Sample C Female 19.7
Sample D Female 28.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
77371835 Antisense, RP_070116_02_E09, Mouse strain C57BL/6J (56 days, male) 1.2
1102 Antisense, RP_Baylor_103105, Mouse strain C57BL/6J (56 days, male) 0.3
1103 Sense, RPS_Baylor_37065, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.