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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:42.0 nTPM
HPA:42.0 nTPM
GTEx:57.5 nTPM
FANTOM5:118.9 Scaled Tags Per Million
Pig:39.8 nTPM
Mouse:29.8 nTPM
Allen mouse:3.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053057
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 29.1
1781 Male, age 74, unknown 35.0
1854 Male, age 80, left hemisphere 34.1
1857 Female, age 85, left hemisphere 33.3
2290 Female, age 72, unknown 29.3
2846 Female, age 79, unknown 28.9
2289 Male, age 61, right hemisphere 25.9
2288 Male, age 75, left hemisphere 23.6
2481 Female, age 94, left hemisphere 22.5
Claustrum
nTPM: 33.6
2284 Female, age 91, both hemispheres 39.1
2491 Male, age 75, both hemispheres 38.1
2196 Female, age 79, unknown 37.6
2198 Male, age 80, both hemispheres 37.4
2568 Male, age 61, both hemispheres 37.4
2645 Female, age 72, unknown 33.5
1956 Male, age 74, unknown 29.0
2392 Female, age 94, both hemispheres 28.3
2292 Female, age 85, both hemispheres 21.6
Globus pallidus, externus
nTPM: 10.3
2646 Male, age 61, right hemisphere 14.7
2395 Male, age 75, both hemispheres 11.8
1996 Male, age 80, right hemisphere 10.2
2772 Female, age 79, unknown 9.8
2567 Female, age 72, unknown 5.1
Globus pallidus, internus
nTPM: 10.7
2483 Female, age 94, right hemisphere 20.8
2287 Male, age 75, right hemisphere 15.5
1818 Male, age 74, unknown 11.3
2037 Male, age 80, right hemisphere 10.1
2566 Female, age 72, unknown 8.9
2778 Female, age 91, both hemispheres 6.7
2111 Female, age 85, right hemisphere 1.3
Nucleus accumbens
nTPM: 31.4
1856 Female, age 91, right hemisphere 54.8
2824 Male, age 61, right hemisphere 34.8
1806 Female, age 85, left hemisphere 32.1
1783 Male, age 74, unknown 32.0
2698 Female, age 72, unknown 30.1
2732 Male, age 80, right hemisphere 28.0
2286 Male, age 75, left hemisphere 25.9
2391 Female, age 94, left hemisphere 13.1
Nucleus basalis of Meynert
nTPM: 21.8
2393 Male, age 80, right hemisphere 26.5
2484 Female, age 94, left hemisphere 25.3
2821 Male, age 75, both hemispheres 19.0
2569 Male, age 61, both hemispheres 16.2
Nucleus of the diagonal band
nTPM: 42.0
1979 Male, age 74, unknown 44.8
2775 Male, age 80, right hemisphere 43.0
2195 Female, age 85, both hemispheres 41.4
1812 Female, age 91, both hemispheres 40.7
2029 Male, age 61, right hemisphere 40.3
Olfactory tubercle
nTPM: 40.3
1998 Female, age 91, both hemispheres 46.0
1846 Male, age 80, right hemisphere 40.7
2856 Male, age 75, right hemisphere 39.4
2487 Female, age 94, left hemisphere 35.0
Putamen
nTPM: 27.1
1937 Female, age 91, right hemisphere 41.9
1838 Male, age 80, right hemisphere 41.7
2466 Female, age 79, unknown 30.3
2482 Female, age 94, left hemisphere 23.0
1829 Male, age 74, unknown 21.2
2489 Female, age 72, unknown 16.2
2647 Male, age 75, left hemisphere 15.7
Septal nuclei
nTPM: 34.9
1960 Male, age 74, unknown 42.4
2009 Female, age 91, both hemispheres 41.5
2031 Female, age 72, unknown 39.2
2629 Female, age 94, right hemisphere 38.3
2059 Female, age 85, both hemispheres 30.4
2199 Male, age 80, right hemisphere 29.7
2394 Male, age 61, left hemisphere 22.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 57.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.7
Samples: 246

Max nTPM: 91.3
Min nTPM: 15.4
Std nTPM: 12.2
Median nTPM: 43.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 91.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 72.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 70.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 69.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 67.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 67.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 63.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 63.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 63.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 63.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 62.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 57.5
Samples: 246

Max nTPM: 111.1
Min nTPM: 9.8
Std nTPM: 17.1
Median nTPM: 59.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 111.1
GTEX-NPJ8-0011-R6a-SM-2HMKB 40-49 years, male 103.3
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 96.5
GTEX-12WSM-0011-R6b-SM-5EQ6N 60-69 years, male 92.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 90.5
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 89.9
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 88.8
GTEX-14BIM-0011-R6b-SM-5S2VB 60-69 years, female 88.2
GTEX-13S7M-0011-R6b-SM-5O9D8 60-69 years, female 86.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 86.7
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 85.9
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Brain - Putamen (basal ganglia)
Average nTPM: 34.6
Samples: 205

Max nTPM: 61.5
Min nTPM: 11.3
Std nTPM: 11.5
Median nTPM: 35.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 61.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 58.4
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 57.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 57.2
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 56.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 56.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 56.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 55.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 55.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 55.0
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 53.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 118.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 118.9
FF:10164-103B2 76 years, female 118.9
Globus pallidus
Scaled Tags Per Million: 33.2
FF:10175-103C4 60 years, female 42.6
FF:10161-103A8 76 years, female 23.8
Nucleus accumbens
Scaled Tags Per Million: 93.1
FF:10037-101F1 23-56 years, mixed 93.1
Putamen
Scaled Tags Per Million: 95.5
FF:10176-103C5 60 years, female 95.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 39.8
Pig sample Sample description nTPM
Caudate
nTPM: 39.3
Samples: 4

Max nTPM: 42.7
Min nTPM: 35.8
Sample A Female 35.8
Sample B Female 40.5
Sample C Male 42.7
Sample D Male 38.0
Putamen
nTPM: 38.3
Samples: 4

Max nTPM: 44.1
Min nTPM: 31.3
Sample A Female 31.3
Sample B Female 34.2
Sample C Male 44.1
Sample D Male 43.4
Septum
nTPM: 35.6
Samples: 4

Max nTPM: 41.7
Min nTPM: 31.5
Sample A Female 41.7
Sample B Female 35.7
Sample C Male 33.4
Sample D Male 31.5
Ventral pallidum
nTPM: 39.8
Samples: 4

Max nTPM: 42.5
Min nTPM: 37.2
Sample A Female 37.2
Sample B Female 41.3
Sample C Male 38.1
Sample D Male 42.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 29.8
Samples: 4

Max nTPM: 31.7
Min nTPM: 28.7
Sample A Male 29.7
Sample B Male 29.2
Sample C Female 31.7
Sample D Female 28.7
Septum
nTPM: 29.0
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.5
Sample A Male 30.4
Sample B Male 24.5
Sample C Female 31.0
Sample D Female 30.0
Ventral forebrain
nTPM: 26.2
Samples: 4

Max nTPM: 29.2
Min nTPM: 21.2
Sample A Male 27.0
Sample B Male 21.2
Sample C Female 29.2
Sample D Female 27.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.2
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 6.3
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 3.2
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 2.1
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 4.2
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 2.4
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.