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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:40.0 nTPM
FANTOM5:75.9 Scaled Tags Per Million
Pig:38.1 nTPM
Mouse:27.6 nTPM
Allen mouse:6.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA053057
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Hippocampus
nTPM: 29.4
1898 Male, age 80, left hemisphere 35.7
2621 Female, age 67, right hemisphere 35.3
2148 Female, age 91, left hemisphere 34.4
1855 Male, age 76, left hemisphere 24.7
2529 Female, age 94, left hemisphere 24.2
1911 Female, age 85, right hemisphere 22.5
Dentate gyrus
nTPM: 34.4
1927 Female, age 91, both hemispheres 44.8
2531 Female, age 67, both hemispheres 42.5
2246 Female, age 85, both hemispheres 33.9
2528 Male, age 74, both hemispheres 31.0
2530 Female, age 94, left hemisphere 27.2
2010 Male, age 76, both hemispheres 27.1
Entorhinal gyrus
nTPM: 28.6
2764 Male, age 80, right hemisphere 36.9
1938 Female, age 85, left hemisphere 29.9
2613 Female, age 94, left hemisphere 29.1
1787 Male, age 76, left hemisphere 27.1
2686 Male, age 75, right hemisphere 26.4
2117 Female, age 91, right hemisphere 22.3
Hippocampus, CA1
nTPM: 34.1
2749 Male, age 80, left hemisphere 45.5
1873 Female, age 85, both hemispheres 33.2
2527 Male, age 74, both hemispheres 31.9
2045 Male, age 76, both hemispheres 31.6
2082 Female, age 91, right hemisphere 28.0
Hippocampus, CA2
nTPM: 26.9
1963 Male, age 80, left hemisphere 30.4
2113 Female, age 91, right hemisphere 27.7
1892 Male, age 76, both hemispheres 27.2
2437 Female, age 94, left hemisphere 26.5
1940 Female, age 85, left hemisphere 25.1
2249 Male, age 74, both hemispheres 24.7
Hippocampus, CA3
nTPM: 30.9
2620 Female, age 94, left hemisphere 49.5
2861 Female, age 67, both hemispheres 36.2
2137 Male, age 80, left hemisphere 33.2
2436 Male, age 74, both hemispheres 24.1
1891 Female, age 85, both hemispheres 22.3
1867 Male, age 76, both hemispheres 20.4
Parahippocampal cortex
nTPM: 32.6
2693 Female, age 94, both hemispheres 40.9
2245 Female, age 91, both hemispheres 37.4
1850 Male, age 80, both hemispheres 37.3
2622 Female, age 67, right hemisphere 36.0
1933 Female, age 85, both hemispheres 34.2
2532 Female, age 72, left hemisphere 33.8
2250 Female, age 67, right hemisphere 32.6
1990 Female, age 91, right hemisphere 31.5
2018 Male, age 76, both hemispheres 22.0
2692 Male, age 74, both hemispheres 20.4
Perirhinal gyrus
nTPM: 42.4
1794 Male, age 80, right hemisphere 50.4
1841 Female, age 85, right hemisphere 44.1
1847 Female, age 91, left hemisphere 43.9
2521 Female, age 94, right hemisphere 41.9
2848 Male, age 76, right hemisphere 31.4
Subiculum
nTPM: 22.8
1977 Female, age 85, both hemispheres 30.8
2619 Male, age 74, both hemispheres 27.9
2729 Female, age 91, right hemisphere 26.4
2438 Female, age 94, left hemisphere 20.7
1901 Male, age 80, both hemispheres 19.6
2042 Male, age 76, both hemispheres 11.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 40.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 40.0
Samples: 197

Max nTPM: 105.4
Min nTPM: 2.7
Std nTPM: 21.6
Median nTPM: 38.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 105.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 93.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 91.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 89.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 85.3
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 84.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 84.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 83.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 81.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 78.7
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 78.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 75.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 75.9
FF:10169-103B7 60 years, female 88.9
FF:10153-102I9 76 years, female 62.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.1
Samples: 4

Max nTPM: 44.6
Min nTPM: 32.5
Sample A Female 44.6
Sample B Female 40.7
Sample C Male 32.5
Sample D Male 34.5
Entorhinal cortex
nTPM: 36.2
Samples: 4

Max nTPM: 38.3
Min nTPM: 33.9
Sample A Female 36.4
Sample B Female 38.3
Sample C Male 33.9
Sample D Male 36.2
Subiculum
nTPM: 32.0
Samples: 4

Max nTPM: 37.7
Min nTPM: 28.9
Sample A Female 37.7
Sample B Female 30.3
Sample C Male 30.9
Sample D Male 28.9
Ventral hippocampus
nTPM: 34.7
Samples: 4

Max nTPM: 43.1
Min nTPM: 26.6
Sample A Female 31.6
Sample B Female 26.6
Sample C Male 37.3
Sample D Male 43.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 27.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 27.6
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.0
Sample A Male 26.9
Sample B Male 26.4
Sample C Female 25.0
Sample D Female 32.1
Hippocampal formation
nTPM: 25.1
Samples: 4

Max nTPM: 30.2
Min nTPM: 21.8
Sample A Male 30.2
Sample B Male 21.8
Sample C Female 23.0
Sample D Female 25.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.9
69013017 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 13.8
70301086 Antisense, RP_050309_01_H02, Mouse strain C57BL/6J (56 days, male) 5.1
70228603 Antisense, RP_050524_04_A05, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.