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IMMP1L
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:46.0 nTPM
FANTOM5:26.1 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:55.0 nTPM

CAUDATE - Antibody stainingi
Antibody HPA058308
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.2
1857 Female, age 85, left hemisphere 44.5
1854 Male, age 80, left hemisphere 44.4
1781 Male, age 74, unknown 43.4
2288 Male, age 75, left hemisphere 43.1
2290 Female, age 72, unknown 43.1
2481 Female, age 94, left hemisphere 43.1
2846 Female, age 79, unknown 42.8
2289 Male, age 61, right hemisphere 41.4
Claustrum
nTPM: 41.8
2198 Male, age 80, both hemispheres 43.7
2196 Female, age 79, unknown 42.9
1956 Male, age 74, unknown 42.8
2491 Male, age 75, both hemispheres 42.7
2392 Female, age 94, both hemispheres 41.6
2645 Female, age 72, unknown 41.3
2568 Male, age 61, both hemispheres 41.0
2292 Female, age 85, both hemispheres 40.4
2284 Female, age 91, both hemispheres 40.1
Globus pallidus, externus
nTPM: 42.6
1996 Male, age 80, right hemisphere 43.8
2772 Female, age 79, unknown 43.5
2646 Male, age 61, right hemisphere 42.6
2567 Female, age 72, unknown 41.6
2395 Male, age 75, both hemispheres 41.5
Globus pallidus, internus
nTPM: 42.8
2483 Female, age 94, right hemisphere 44.4
2287 Male, age 75, right hemisphere 44.0
2566 Female, age 72, unknown 42.8
2778 Female, age 91, both hemispheres 42.5
2111 Female, age 85, right hemisphere 42.3
2037 Male, age 80, right hemisphere 42.0
1818 Male, age 74, unknown 41.3
Nucleus accumbens
nTPM: 43.7
1806 Female, age 85, left hemisphere 45.6
2286 Male, age 75, left hemisphere 44.1
1783 Male, age 74, unknown 43.9
2698 Female, age 72, unknown 43.9
2824 Male, age 61, right hemisphere 43.9
2391 Female, age 94, left hemisphere 43.3
2732 Male, age 80, right hemisphere 42.9
1856 Female, age 91, right hemisphere 42.3
Nucleus basalis of Meynert
nTPM: 42.9
2821 Male, age 75, both hemispheres 43.4
2484 Female, age 94, left hemisphere 43.3
2393 Male, age 80, right hemisphere 42.5
2569 Male, age 61, both hemispheres 42.3
Nucleus of the diagonal band
nTPM: 42.5
2195 Female, age 85, both hemispheres 42.7
1979 Male, age 74, unknown 42.6
1812 Female, age 91, both hemispheres 42.5
2029 Male, age 61, right hemisphere 42.4
2775 Male, age 80, right hemisphere 42.4
Olfactory tubercle
nTPM: 42.6
1846 Male, age 80, right hemisphere 44.0
2487 Female, age 94, left hemisphere 42.5
1998 Female, age 91, both hemispheres 42.0
2856 Male, age 75, right hemisphere 41.8
Putamen
nTPM: 43.1
2466 Female, age 79, unknown 44.9
1838 Male, age 80, right hemisphere 44.1
2482 Female, age 94, left hemisphere 43.9
2489 Female, age 72, unknown 42.7
1937 Female, age 91, right hemisphere 42.5
1829 Male, age 74, unknown 42.2
2647 Male, age 75, left hemisphere 41.2
Septal nuclei
nTPM: 42.3
1960 Male, age 74, unknown 43.7
2031 Female, age 72, unknown 43.5
2059 Female, age 85, both hemispheres 43.0
2199 Male, age 80, right hemisphere 42.4
2629 Female, age 94, right hemisphere 41.6
2009 Female, age 91, both hemispheres 41.4
2394 Male, age 61, left hemisphere 40.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.5
Samples: 246

Max nTPM: 142.2
Min nTPM: 13.3
Std nTPM: 15.4
Median nTPM: 37.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 142.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 122.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 104.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 90.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 87.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 85.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 74.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 70.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 67.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 65.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 65.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 46.0
Samples: 246

Max nTPM: 178.3
Min nTPM: 10.7
Std nTPM: 17.0
Median nTPM: 43.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 178.3
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 113.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 98.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 95.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 84.8
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 77.4
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 77.2
GTEX-1BAJH-0011-R6b-SM-7MXT2 70-79 years, male 77.0
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 75.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 75.0
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 72.5
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Brain - Putamen (basal ganglia)
Average nTPM: 42.7
Samples: 205

Max nTPM: 107.2
Min nTPM: 17.2
Std nTPM: 14.6
Median nTPM: 40.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 107.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 89.1
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 81.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 79.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 77.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 75.0
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 75.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 73.8
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 72.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 72.5
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 71.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.3
FF:10164-103B2 76 years, female 18.3
Globus pallidus
Scaled Tags Per Million: 21.8
FF:10175-103C4 60 years, female 26.8
FF:10161-103A8 76 years, female 16.8
Nucleus accumbens
Scaled Tags Per Million: 20.0
FF:10037-101F1 23-56 years, mixed 20.0
Putamen
Scaled Tags Per Million: 26.1
FF:10176-103C5 60 years, female 26.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Caudate
nTPM: 13.8
Samples: 4

Max nTPM: 16.2
Min nTPM: 11.0
Sample A Female 16.2
Sample B Female 14.6
Sample C Male 13.4
Sample D Male 11.0
Putamen
nTPM: 15.7
Samples: 4

Max nTPM: 21.6
Min nTPM: 13.4
Sample A Female 13.8
Sample B Female 13.4
Sample C Male 21.6
Sample D Male 14.1
Septum
nTPM: 15.4
Samples: 4

Max nTPM: 18.0
Min nTPM: 13.3
Sample A Female 18.0
Sample B Female 15.1
Sample C Male 15.3
Sample D Male 13.3
Ventral pallidum
nTPM: 14.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 12.0
Sample A Female 14.8
Sample B Female 17.1
Sample C Male 13.1
Sample D Male 12.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 55.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 55.0
Samples: 4

Max nTPM: 58.4
Min nTPM: 52.0
Sample A Male 58.4
Sample B Male 52.0
Sample C Female 54.5
Sample D Female 55.1
Septum
nTPM: 44.8
Samples: 4

Max nTPM: 49.9
Min nTPM: 37.9
Sample A Male 37.9
Sample B Male 49.9
Sample C Female 45.7
Sample D Female 45.6
Ventral forebrain
nTPM: 45.0
Samples: 4

Max nTPM: 53.8
Min nTPM: 40.1
Sample A Male 43.1
Sample B Male 40.1
Sample C Female 53.8
Sample D Female 42.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.