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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.4 nTPM
HPA:56.4 nTPM
GTEx:31.6 nTPM
FANTOM5:158.4 Scaled Tags Per Million
Pig:70.2 nTPM
Mouse:68.6 nTPM
Allen mouse:7.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.2
1857 Female, age 85, left hemisphere 74.0
2290 Female, age 72, unknown 60.7
1854 Male, age 80, left hemisphere 57.6
2481 Female, age 94, left hemisphere 53.6
2289 Male, age 61, right hemisphere 48.9
2846 Female, age 79, unknown 47.0
2288 Male, age 75, left hemisphere 46.2
1781 Male, age 74, unknown 37.9
Claustrum
nTPM: 22.9
2196 Female, age 79, unknown 32.5
2491 Male, age 75, both hemispheres 27.5
2392 Female, age 94, both hemispheres 26.6
2284 Female, age 91, both hemispheres 25.1
2198 Male, age 80, both hemispheres 24.9
2568 Male, age 61, both hemispheres 20.9
1956 Male, age 74, unknown 18.6
2292 Female, age 85, both hemispheres 15.7
2645 Female, age 72, unknown 14.5
Globus pallidus, externus
nTPM: 28.4
2646 Male, age 61, right hemisphere 38.2
2395 Male, age 75, both hemispheres 30.8
2772 Female, age 79, unknown 29.0
1996 Male, age 80, right hemisphere 26.6
2567 Female, age 72, unknown 17.6
Globus pallidus, internus
nTPM: 26.0
2483 Female, age 94, right hemisphere 53.2
2287 Male, age 75, right hemisphere 32.3
1818 Male, age 74, unknown 28.7
2037 Male, age 80, right hemisphere 20.4
2778 Female, age 91, both hemispheres 19.7
2566 Female, age 72, unknown 14.4
2111 Female, age 85, right hemisphere 13.6
Nucleus accumbens
nTPM: 56.4
1856 Female, age 91, right hemisphere 78.2
1806 Female, age 85, left hemisphere 75.3
1783 Male, age 74, unknown 63.9
2824 Male, age 61, right hemisphere 63.7
2698 Female, age 72, unknown 52.5
2286 Male, age 75, left hemisphere 52.3
2391 Female, age 94, left hemisphere 34.9
2732 Male, age 80, right hemisphere 30.1
Nucleus basalis of Meynert
nTPM: 38.5
2393 Male, age 80, right hemisphere 50.3
2569 Male, age 61, both hemispheres 42.6
2484 Female, age 94, left hemisphere 39.5
2821 Male, age 75, both hemispheres 21.5
Nucleus of the diagonal band
nTPM: 29.9
1812 Female, age 91, both hemispheres 33.8
1979 Male, age 74, unknown 33.4
2775 Male, age 80, right hemisphere 31.3
2195 Female, age 85, both hemispheres 28.1
2029 Male, age 61, right hemisphere 23.2
Olfactory tubercle
nTPM: 30.4
1846 Male, age 80, right hemisphere 35.8
2856 Male, age 75, right hemisphere 29.3
1998 Female, age 91, both hemispheres 28.7
2487 Female, age 94, left hemisphere 28.0
Putamen
nTPM: 48.3
1838 Male, age 80, right hemisphere 71.5
1937 Female, age 91, right hemisphere 59.5
2466 Female, age 79, unknown 46.6
2482 Female, age 94, left hemisphere 45.2
1829 Male, age 74, unknown 42.7
2647 Male, age 75, left hemisphere 41.7
2489 Female, age 72, unknown 30.7
Septal nuclei
nTPM: 26.6
2031 Female, age 72, unknown 35.3
1960 Male, age 74, unknown 33.7
2059 Female, age 85, both hemispheres 30.8
2009 Female, age 91, both hemispheres 26.6
2629 Female, age 94, right hemisphere 24.7
2199 Male, age 80, right hemisphere 18.7
2394 Male, age 61, left hemisphere 16.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.5
Samples: 246

Max nTPM: 57.0
Min nTPM: 12.1
Std nTPM: 6.2
Median nTPM: 26.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 51.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 42.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 41.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 41.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 39.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 39.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 39.2
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 38.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 37.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 31.6
Samples: 246

Max nTPM: 55.5
Min nTPM: 8.3
Std nTPM: 8.6
Median nTPM: 32.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 55.5
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 55.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 53.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 52.7
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 50.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 48.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 46.8
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 46.4
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 46.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 45.8
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 45.5
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Brain - Putamen (basal ganglia)
Average nTPM: 23.9
Samples: 205

Max nTPM: 48.7
Min nTPM: 8.9
Std nTPM: 5.7
Median nTPM: 23.6
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 48.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 42.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 41.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 36.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 36.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 35.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 34.3
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 33.7
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 33.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 33.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 158.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 127.1
FF:10164-103B2 76 years, female 127.1
Globus pallidus
Scaled Tags Per Million: 41.9
FF:10161-103A8 76 years, female 43.7
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 100.7
FF:10037-101F1 23-56 years, mixed 100.7
Putamen
Scaled Tags Per Million: 158.4
FF:10176-103C5 60 years, female 158.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 70.2
Pig sample Sample description nTPM
Caudate
nTPM: 69.2
Samples: 4

Max nTPM: 72.7
Min nTPM: 65.4
Sample A Female 67.1
Sample B Female 71.4
Sample C Male 72.7
Sample D Male 65.4
Putamen
nTPM: 70.2
Samples: 4

Max nTPM: 87.8
Min nTPM: 53.2
Sample A Female 53.2
Sample B Female 69.9
Sample C Male 87.8
Sample D Male 69.8
Septum
nTPM: 48.0
Samples: 4

Max nTPM: 56.1
Min nTPM: 36.8
Sample A Female 56.1
Sample B Female 52.8
Sample C Male 46.1
Sample D Male 36.8
Ventral pallidum
nTPM: 57.2
Samples: 4

Max nTPM: 65.7
Min nTPM: 44.7
Sample A Female 65.7
Sample B Female 60.8
Sample C Male 44.7
Sample D Male 57.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 68.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 68.6
Samples: 4

Max nTPM: 75.8
Min nTPM: 59.4
Sample A Male 75.8
Sample B Male 70.4
Sample C Female 59.4
Sample D Female 68.6
Septum
nTPM: 50.1
Samples: 4

Max nTPM: 54.2
Min nTPM: 45.6
Sample A Male 51.0
Sample B Male 49.4
Sample C Female 45.6
Sample D Female 54.2
Ventral forebrain
nTPM: 54.8
Samples: 4

Max nTPM: 59.7
Min nTPM: 51.6
Sample A Male 54.1
Sample B Male 59.7
Sample C Female 51.6
Sample D Female 53.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.5
69873594 Antisense, RP_050512_01_E12, Mouse strain C57BL/6J (56 days, male) 14.9
71158349 Antisense, RP_050810_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 5.5
69873594 Antisense, RP_050512_01_E12, Mouse strain C57BL/6J (56 days, male) 11.1
71158349 Antisense, RP_050810_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.