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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni
Consensus:30.3 nTPM
HPA:30.3 nTPM
GTEx:30.3 nTPM
FANTOM5:99.1 Scaled Tags Per Million
Pig:15.5 nTPM
Mouse:51.1 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008932Antibody HPA010517
Glial cells HighHigh
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.3
Sample id Sample description nTPM
Hippocampus
nTPM: 26.3
1898 Male, age 80, left hemisphere 29.4
1911 Female, age 85, right hemisphere 27.7
2529 Female, age 94, left hemisphere 27.7
1855 Male, age 76, left hemisphere 26.3
2621 Female, age 67, right hemisphere 24.0
2148 Female, age 91, left hemisphere 22.5
Dentate gyrus
nTPM: 25.5
2528 Male, age 74, both hemispheres 31.0
2530 Female, age 94, left hemisphere 31.0
2010 Male, age 76, both hemispheres 28.9
2246 Female, age 85, both hemispheres 23.2
1927 Female, age 91, both hemispheres 20.0
2531 Female, age 67, both hemispheres 18.6
Entorhinal gyrus
nTPM: 27.6
2117 Female, age 91, right hemisphere 37.6
2764 Male, age 80, right hemisphere 29.2
1938 Female, age 85, left hemisphere 26.6
1787 Male, age 76, left hemisphere 25.8
2613 Female, age 94, left hemisphere 23.3
2686 Male, age 75, right hemisphere 23.2
Hippocampus, CA1
nTPM: 25.8
2527 Male, age 74, both hemispheres 30.8
2749 Male, age 80, left hemisphere 30.1
1873 Female, age 85, both hemispheres 26.1
2082 Female, age 91, right hemisphere 23.4
2045 Male, age 76, both hemispheres 18.9
Hippocampus, CA2
nTPM: 28.1
2249 Male, age 74, both hemispheres 34.8
1963 Male, age 80, left hemisphere 33.8
1892 Male, age 76, both hemispheres 27.8
2437 Female, age 94, left hemisphere 25.6
2113 Female, age 91, right hemisphere 24.1
1940 Female, age 85, left hemisphere 22.8
Hippocampus, CA3
nTPM: 23.9
1891 Female, age 85, both hemispheres 30.8
1867 Male, age 76, both hemispheres 29.6
2137 Male, age 80, left hemisphere 25.6
2436 Male, age 74, both hemispheres 24.0
2620 Female, age 94, left hemisphere 17.9
2861 Female, age 67, both hemispheres 15.5
Parahippocampal cortex
nTPM: 24.1
2692 Male, age 74, both hemispheres 29.4
1990 Female, age 91, right hemisphere 28.1
1850 Male, age 80, both hemispheres 27.6
2532 Female, age 72, left hemisphere 26.1
1933 Female, age 85, both hemispheres 25.0
2245 Female, age 91, both hemispheres 23.0
2018 Male, age 76, both hemispheres 22.6
2693 Female, age 94, both hemispheres 22.5
2250 Female, age 67, right hemisphere 20.7
2622 Female, age 67, right hemisphere 16.5
Perirhinal gyrus
nTPM: 22.4
1794 Male, age 80, right hemisphere 25.7
2521 Female, age 94, right hemisphere 23.1
1841 Female, age 85, right hemisphere 21.3
2848 Male, age 76, right hemisphere 21.3
1847 Female, age 91, left hemisphere 20.9
Subiculum
nTPM: 30.3
1901 Male, age 80, both hemispheres 34.1
2042 Male, age 76, both hemispheres 33.3
1977 Female, age 85, both hemispheres 32.1
2619 Male, age 74, both hemispheres 29.4
2438 Female, age 94, left hemisphere 27.4
2729 Female, age 91, right hemisphere 25.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.3
Samples: 197

Max nTPM: 61.9
Min nTPM: 9.8
Std nTPM: 11.2
Median nTPM: 28.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 61.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 61.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 59.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 58.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 56.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 55.8
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 54.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 54.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 54.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 53.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 53.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.1
FF:10153-102I9 76 years, female 99.8
FF:10169-103B7 60 years, female 98.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 9.9
Sample A Female 17.4
Sample B Female 14.8
Sample C Male 12.3
Sample D Male 9.9
Entorhinal cortex
nTPM: 15.5
Samples: 4

Max nTPM: 18.2
Min nTPM: 11.7
Sample A Female 16.5
Sample B Female 18.2
Sample C Male 15.5
Sample D Male 11.7
Subiculum
nTPM: 13.0
Samples: 4

Max nTPM: 15.2
Min nTPM: 11.4
Sample A Female 11.9
Sample B Female 13.5
Sample C Male 11.4
Sample D Male 15.2
Ventral hippocampus
nTPM: 12.6
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.8
Sample A Female 15.8
Sample B Female 9.8
Sample C Male 15.1
Sample D Male 9.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 51.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 37.1
Samples: 4

Max nTPM: 39.5
Min nTPM: 34.9
Sample A Male 39.5
Sample B Male 34.9
Sample C Female 38.4
Sample D Female 35.6
Hippocampal formation
nTPM: 51.1
Samples: 4

Max nTPM: 71.8
Min nTPM: 38.2
Sample A Male 38.2
Sample B Male 48.6
Sample C Female 71.8
Sample D Female 45.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
68410285 Antisense, RP_041214_01_F02, Mouse strain C57BL/6J (56 days, male) 4.0
71015195 Antisense, RP_050725_02_G02, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.