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EML3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.4 nTPM
HPA:15.4 nTPM
GTEx:20.1 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:7.3 nTPM
Mouse:6.3 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.8
2481 Female, age 94, left hemisphere 14.7
2289 Male, age 61, right hemisphere 14.4
2846 Female, age 79, unknown 11.6
1781 Male, age 74, unknown 11.5
1854 Male, age 80, left hemisphere 10.9
1857 Female, age 85, left hemisphere 10.9
2290 Female, age 72, unknown 10.9
2288 Male, age 75, left hemisphere 9.9
Claustrum
nTPM: 11.9
2292 Female, age 85, both hemispheres 18.4
2284 Female, age 91, both hemispheres 13.1
2645 Female, age 72, unknown 12.1
1956 Male, age 74, unknown 11.2
2568 Male, age 61, both hemispheres 11.2
2198 Male, age 80, both hemispheres 11.0
2196 Female, age 79, unknown 10.3
2491 Male, age 75, both hemispheres 10.0
2392 Female, age 94, both hemispheres 9.5
Globus pallidus, externus
nTPM: 15.4
2567 Female, age 72, unknown 19.6
2646 Male, age 61, right hemisphere 18.0
1996 Male, age 80, right hemisphere 16.2
2772 Female, age 79, unknown 12.0
2395 Male, age 75, both hemispheres 11.2
Globus pallidus, internus
nTPM: 15.4
2111 Female, age 85, right hemisphere 19.8
2566 Female, age 72, unknown 18.8
2037 Male, age 80, right hemisphere 17.1
2778 Female, age 91, both hemispheres 14.9
1818 Male, age 74, unknown 13.3
2483 Female, age 94, right hemisphere 12.5
2287 Male, age 75, right hemisphere 11.3
Nucleus accumbens
nTPM: 10.4
2732 Male, age 80, right hemisphere 13.4
2698 Female, age 72, unknown 11.8
2391 Female, age 94, left hemisphere 11.6
1806 Female, age 85, left hemisphere 10.8
1783 Male, age 74, unknown 10.2
2286 Male, age 75, left hemisphere 8.7
1856 Female, age 91, right hemisphere 8.5
2824 Male, age 61, right hemisphere 8.5
Nucleus basalis of Meynert
nTPM: 14.2
2569 Male, age 61, both hemispheres 20.7
2484 Female, age 94, left hemisphere 13.5
2393 Male, age 80, right hemisphere 12.5
2821 Male, age 75, both hemispheres 10.2
Nucleus of the diagonal band
nTPM: 9.2
1979 Male, age 74, unknown 10.9
1812 Female, age 91, both hemispheres 9.2
2029 Male, age 61, right hemisphere 9.2
2195 Female, age 85, both hemispheres 8.7
2775 Male, age 80, right hemisphere 8.1
Olfactory tubercle
nTPM: 8.7
2856 Male, age 75, right hemisphere 10.4
1998 Female, age 91, both hemispheres 8.4
1846 Male, age 80, right hemisphere 8.2
2487 Female, age 94, left hemisphere 7.7
Putamen
nTPM: 11.9
2647 Male, age 75, left hemisphere 16.5
2489 Female, age 72, unknown 15.8
2482 Female, age 94, left hemisphere 11.9
1829 Male, age 74, unknown 11.2
2466 Female, age 79, unknown 10.7
1838 Male, age 80, right hemisphere 9.0
1937 Female, age 91, right hemisphere 8.5
Septal nuclei
nTPM: 10.0
2199 Male, age 80, right hemisphere 14.0
2394 Male, age 61, left hemisphere 12.6
2059 Female, age 85, both hemispheres 10.9
2629 Female, age 94, right hemisphere 8.8
2009 Female, age 91, both hemispheres 8.6
1960 Male, age 74, unknown 7.7
2031 Female, age 72, unknown 7.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 16.8
Samples: 246

Max nTPM: 71.4
Min nTPM: 2.3
Std nTPM: 8.2
Median nTPM: 15.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 71.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 42.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 41.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 40.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 39.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 39.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 38.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 36.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 34.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 34.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 34.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.0
Samples: 246

Max nTPM: 69.7
Min nTPM: 5.1
Std nTPM: 9.4
Median nTPM: 12.6
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 69.7
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 50.3
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 49.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 44.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 43.8
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 41.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 41.2
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 41.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 40.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 40.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 38.1
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Brain - Putamen (basal ganglia)
Average nTPM: 20.1
Samples: 205

Max nTPM: 66.0
Min nTPM: 5.3
Std nTPM: 9.5
Median nTPM: 17.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 66.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 58.9
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 49.7
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 42.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 41.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 41.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 40.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 40.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 39.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 39.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 39.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 24.9
FF:10164-103B2 76 years, female 24.9
Globus pallidus
Scaled Tags Per Million: 23.4
FF:10161-103A8 76 years, female 35.7
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 12.4
FF:10037-101F1 23-56 years, mixed 12.4
Putamen
Scaled Tags Per Million: 15.8
FF:10176-103C5 60 years, female 15.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 7.3
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.4
Sample C Male 5.4
Sample D Male 4.6
Putamen
nTPM: 7.3
Samples: 4

Max nTPM: 10.7
Min nTPM: 5.0
Sample A Female 10.7
Sample B Female 5.0
Sample C Male 6.6
Sample D Male 6.9
Septum
nTPM: 6.0
Samples: 4

Max nTPM: 6.5
Min nTPM: 5.3
Sample A Female 6.0
Sample B Female 5.3
Sample C Male 6.5
Sample D Male 6.1
Ventral pallidum
nTPM: 6.1
Samples: 4

Max nTPM: 7.8
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 6.0
Sample C Male 7.8
Sample D Male 6.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.9
Sample A Male 5.4
Sample B Male 6.3
Sample C Female 4.9
Sample D Female 5.4
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.7
Sample A Male 5.7
Sample B Male 7.2
Sample C Female 6.3
Sample D Female 6.0
Ventral forebrain
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.4
Sample A Male 4.4
Sample B Male 5.5
Sample C Female 5.6
Sample D Female 5.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
68499195 Antisense, RP_050118_01_B03, Mouse strain C57BL/6J (56 days, male) 0.4
71015805 Antisense, RP_050725_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
68499195 Antisense, RP_050118_01_B03, Mouse strain C57BL/6J (56 days, male) 0.2
71015805 Antisense, RP_050725_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.