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EML3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.5 nTPM
HPA:14.5 nTPM
GTEx:20.4 nTPM
FANTOM5:23.7 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:5.1 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.5
Sample id Sample description nTPM
Hippocampus
nTPM: 14.5
2529 Female, age 94, left hemisphere 19.8
1911 Female, age 85, right hemisphere 15.0
2621 Female, age 67, right hemisphere 14.9
2148 Female, age 91, left hemisphere 13.4
1855 Male, age 76, left hemisphere 12.1
1898 Male, age 80, left hemisphere 12.1
Dentate gyrus
nTPM: 12.6
2530 Female, age 94, left hemisphere 15.7
2528 Male, age 74, both hemispheres 13.5
2246 Female, age 85, both hemispheres 12.8
2010 Male, age 76, both hemispheres 12.5
1927 Female, age 91, both hemispheres 11.2
2531 Female, age 67, both hemispheres 10.3
Entorhinal gyrus
nTPM: 11.7
2117 Female, age 91, right hemisphere 14.7
2686 Male, age 75, right hemisphere 14.7
1787 Male, age 76, left hemisphere 11.4
2764 Male, age 80, right hemisphere 11.0
2613 Female, age 94, left hemisphere 10.1
1938 Female, age 85, left hemisphere 8.7
Hippocampus, CA1
nTPM: 12.1
2527 Male, age 74, both hemispheres 14.2
1873 Female, age 85, both hemispheres 13.3
2082 Female, age 91, right hemisphere 12.9
2749 Male, age 80, left hemisphere 11.5
2045 Male, age 76, both hemispheres 8.7
Hippocampus, CA2
nTPM: 13.7
1963 Male, age 80, left hemisphere 16.5
2437 Female, age 94, left hemisphere 14.0
2113 Female, age 91, right hemisphere 13.4
2249 Male, age 74, both hemispheres 13.1
1940 Female, age 85, left hemisphere 12.7
1892 Male, age 76, both hemispheres 12.5
Hippocampus, CA3
nTPM: 11.8
2861 Female, age 67, both hemispheres 13.3
1891 Female, age 85, both hemispheres 12.1
2436 Male, age 74, both hemispheres 11.9
2137 Male, age 80, left hemisphere 11.8
2620 Female, age 94, left hemisphere 11.0
1867 Male, age 76, both hemispheres 10.9
Parahippocampal cortex
nTPM: 11.1
2692 Male, age 74, both hemispheres 14.3
2622 Female, age 67, right hemisphere 13.5
2245 Female, age 91, both hemispheres 12.2
2018 Male, age 76, both hemispheres 11.4
2250 Female, age 67, right hemisphere 11.2
2532 Female, age 72, left hemisphere 10.4
1990 Female, age 91, right hemisphere 10.2
1933 Female, age 85, both hemispheres 9.3
2693 Female, age 94, both hemispheres 9.3
1850 Male, age 80, both hemispheres 8.8
Perirhinal gyrus
nTPM: 8.3
1794 Male, age 80, right hemisphere 8.6
2848 Male, age 76, right hemisphere 8.5
2521 Female, age 94, right hemisphere 8.4
1847 Female, age 91, left hemisphere 8.2
1841 Female, age 85, right hemisphere 7.6
Subiculum
nTPM: 13.5
2619 Male, age 74, both hemispheres 16.6
2042 Male, age 76, both hemispheres 15.2
2729 Female, age 91, right hemisphere 14.1
1901 Male, age 80, both hemispheres 13.4
2438 Female, age 94, left hemisphere 12.9
1977 Female, age 85, both hemispheres 9.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.4
Samples: 197

Max nTPM: 45.9
Min nTPM: 5.7
Std nTPM: 8.4
Median nTPM: 18.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 45.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 45.6
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 44.8
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 43.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 42.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 41.6
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 40.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 40.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 39.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 38.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 37.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 23.7
FF:10153-102I9 76 years, female 28.7
FF:10169-103B7 60 years, female 18.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 6.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 6.0
Samples: 4

Max nTPM: 7.9
Min nTPM: 4.5
Sample A Female 7.9
Sample B Female 5.3
Sample C Male 6.3
Sample D Male 4.5
Entorhinal cortex
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.6
Sample A Female 4.6
Sample B Female 4.8
Sample C Male 5.4
Sample D Male 3.6
Subiculum
nTPM: 4.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.2
Sample A Female 5.4
Sample B Female 4.2
Sample C Male 4.5
Sample D Male 4.2
Ventral hippocampus
nTPM: 5.7
Samples: 4

Max nTPM: 7.4
Min nTPM: 4.4
Sample A Female 5.4
Sample B Female 4.4
Sample C Male 7.4
Sample D Male 5.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.9
Samples: 4

Max nTPM: 6.2
Min nTPM: 3.8
Sample A Male 6.2
Sample B Male 5.4
Sample C Female 4.1
Sample D Female 3.8
Hippocampal formation
nTPM: 5.1
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.2
Sample A Male 4.2
Sample B Male 4.9
Sample C Female 5.6
Sample D Female 5.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
68499195 Antisense, RP_050118_01_B03, Mouse strain C57BL/6J (56 days, male) 1.6
71015805 Antisense, RP_050725_02_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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