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CPSF7
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:37.9 nTPM
HPA:37.9 nTPM
GTEx:31.7 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:28.5 nTPM
Mouse:31.0 nTPM
Allen mouse:9.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041094
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 37.9
Sample id Sample description nTPM
Hippocampus
nTPM: 37.0
2529 Female, age 94, left hemisphere 42.6
2621 Female, age 67, right hemisphere 38.5
2148 Female, age 91, left hemisphere 38.4
1855 Male, age 76, left hemisphere 35.0
1911 Female, age 85, right hemisphere 34.9
1898 Male, age 80, left hemisphere 32.8
Dentate gyrus
nTPM: 35.2
2246 Female, age 85, both hemispheres 40.2
2531 Female, age 67, both hemispheres 36.4
2528 Male, age 74, both hemispheres 35.8
2530 Female, age 94, left hemisphere 35.1
2010 Male, age 76, both hemispheres 32.0
1927 Female, age 91, both hemispheres 31.7
Entorhinal gyrus
nTPM: 37.9
2686 Male, age 75, right hemisphere 39.8
2117 Female, age 91, right hemisphere 38.3
2613 Female, age 94, left hemisphere 38.3
2764 Male, age 80, right hemisphere 38.2
1787 Male, age 76, left hemisphere 37.8
1938 Female, age 85, left hemisphere 35.4
Hippocampus, CA1
nTPM: 34.2
2527 Male, age 74, both hemispheres 36.6
2045 Male, age 76, both hemispheres 34.6
2082 Female, age 91, right hemisphere 34.2
1873 Female, age 85, both hemispheres 33.6
2749 Male, age 80, left hemisphere 32.0
Hippocampus, CA2
nTPM: 34.6
1940 Female, age 85, left hemisphere 36.9
2113 Female, age 91, right hemisphere 36.4
2437 Female, age 94, left hemisphere 36.4
2249 Male, age 74, both hemispheres 35.5
1892 Male, age 76, both hemispheres 31.5
1963 Male, age 80, left hemisphere 30.8
Hippocampus, CA3
nTPM: 35.3
2620 Female, age 94, left hemisphere 40.1
2861 Female, age 67, both hemispheres 37.3
1891 Female, age 85, both hemispheres 36.2
2436 Male, age 74, both hemispheres 36.0
2137 Male, age 80, left hemisphere 31.7
1867 Male, age 76, both hemispheres 30.8
Parahippocampal cortex
nTPM: 37.7
2622 Female, age 67, right hemisphere 44.8
2692 Male, age 74, both hemispheres 40.6
2532 Female, age 72, left hemisphere 40.3
2245 Female, age 91, both hemispheres 38.8
1850 Male, age 80, both hemispheres 36.7
2693 Female, age 94, both hemispheres 36.3
2250 Female, age 67, right hemisphere 36.1
1990 Female, age 91, right hemisphere 35.8
1933 Female, age 85, both hemispheres 34.1
2018 Male, age 76, both hemispheres 33.0
Perirhinal gyrus
nTPM: 37.1
2848 Male, age 76, right hemisphere 40.1
1841 Female, age 85, right hemisphere 37.7
2521 Female, age 94, right hemisphere 37.4
1794 Male, age 80, right hemisphere 36.5
1847 Female, age 91, left hemisphere 33.6
Subiculum
nTPM: 37.5
2438 Female, age 94, left hemisphere 45.0
2619 Male, age 74, both hemispheres 41.9
2729 Female, age 91, right hemisphere 35.5
1901 Male, age 80, both hemispheres 35.2
2042 Male, age 76, both hemispheres 34.2
1977 Female, age 85, both hemispheres 33.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 31.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 31.7
Samples: 197

Max nTPM: 46.1
Min nTPM: 17.1
Std nTPM: 4.8
Median nTPM: 31.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 46.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 46.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 46.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 46.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 43.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 43.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 42.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 42.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 41.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 40.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 40.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.1
FF:10153-102I9 76 years, female 49.2
FF:10169-103B7 60 years, female 47.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 28.5
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 28.5
Samples: 4

Max nTPM: 31.7
Min nTPM: 24.3
Sample A Female 31.7
Sample B Female 27.6
Sample C Male 30.3
Sample D Male 24.3
Entorhinal cortex
nTPM: 24.5
Samples: 4

Max nTPM: 27.7
Min nTPM: 22.9
Sample A Female 27.7
Sample B Female 22.9
Sample C Male 23.4
Sample D Male 23.8
Subiculum
nTPM: 26.9
Samples: 4

Max nTPM: 31.4
Min nTPM: 24.1
Sample A Female 31.4
Sample B Female 24.1
Sample C Male 27.6
Sample D Male 24.6
Ventral hippocampus
nTPM: 26.9
Samples: 4

Max nTPM: 33.4
Min nTPM: 20.8
Sample A Female 25.0
Sample B Female 20.8
Sample C Male 33.4
Sample D Male 28.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 31.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.2
Samples: 4

Max nTPM: 31.1
Min nTPM: 29.5
Sample A Male 30.4
Sample B Male 31.1
Sample C Female 29.5
Sample D Female 29.6
Hippocampal formation
nTPM: 31.0
Samples: 4

Max nTPM: 32.2
Min nTPM: 29.8
Sample A Male 30.9
Sample B Male 32.2
Sample C Female 31.0
Sample D Female 29.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.3
70445502 Antisense, RP_050614_04_A03, Mouse strain C57BL/6J (56 days, male) 9.3

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