ABOUTMENU
HELP
NEWS
CPSF7
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.0 nTPM
HPA:41.0 nTPM
GTEx:30.3 nTPM
FANTOM5:44.9 Scaled Tags Per Million
Pig:30.8 nTPM
Mouse:30.9 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.8
1833 Male, age 53, unknown 39.5
2586 Male, age 75, left hemisphere 38.0
1830 Male, age 51, unknown 37.9
1870 Female, age 42, unknown 37.6
2828 Female, age 72, unknown 37.5
1827 Male, age 72, unknown 37.0
2666 Male, age 74, left hemisphere 36.2
2219 Male, age 76, both hemispheres 35.4
2411 Female, age 72, unknown 34.7
2019 Male, age 18, unknown 33.9
Dorsal raphe nucleus
nTPM: 34.0
2016 Female, age 72, unknown 35.1
2750 Male, age 76, both hemispheres 34.9
1828 Male, age 53, unknown 34.6
2047 Male, age 72, unknown 33.3
2298 Female, age 72, unknown 31.8
Inferior colliculus
nTPM: 36.6
2849 Male, age 72, unknown 44.8
1848 Female, age 42, unknown 36.0
1890 Male, age 53, unknown 34.0
2097 Female, age 72, unknown 31.4
Median raphe nucleus
nTPM: 39.8
2220 Male, age 76, midline 39.8
Pedunculopontine tegmental nucleus
nTPM: 36.4
2338 Male, age 61, both hemispheres 39.0
2334 Male, age 80, both hemispheres 37.2
1921 Female, age 85, both hemispheres 33.0
Periaquaductal grey, anterior
nTPM: 36.0
1947 Male, age 18, unknown 36.6
2502 Female, age 75, unknown 36.0
1795 Male, age 51, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 37.5
2850 Male, age 76, both hemispheres 47.5
1831 Male, age 72, unknown 35.5
1840 Male, age 53, unknown 33.8
2464 Female, age 72, unknown 33.1
Periaquaductal grey, lateral
nTPM: 41.0
2140 Male, age 76, both hemispheres 44.3
2272 Male, age 74, both hemispheres 40.2
2053 Male, age 18, unknown 38.6
Pretectal area
nTPM: 37.2
2407 Male, age 75, both hemispheres 41.9
2667 Female, age 75, unknown 38.4
1815 Male, age 53, unknown 37.9
2316 Male, age 76, right hemisphere 37.4
1816 Male, age 51, unknown 37.2
2825 Male, age 18, unknown 37.2
1817 Female, age 42, unknown 37.1
2273 Male, age 74, both hemispheres 36.7
2224 Female, age 72, unknown 35.7
2007 Male, age 72, unknown 35.2
1944 Female, age 72, unknown 34.7
Red nucleus
nTPM: 37.3
2725 Female, age 75, unknown 39.3
2227 Male, age 72, unknown 38.5
2785 Male, age 18, unknown 38.5
1904 Male, age 53, unknown 38.4
1865 Male, age 51, unknown 37.9
2584 Male, age 75, left hemisphere 37.5
2769 Male, age 72, unknown 37.2
2588 Male, age 74, left hemisphere 36.3
2823 Male, age 76, right hemisphere 36.3
2503 Female, age 72, unknown 36.0
1821 Female, age 72, unknown 35.8
1954 Female, age 42, unknown 35.5
Substantia nigra
nTPM: 36.0
2409 Female, age 72, unknown 40.4
2699 Male, age 18, unknown 40.4
2583 Male, age 75, right hemisphere 37.0
1941 Male, age 53, unknown 35.9
2665 Male, age 74, both hemispheres 35.9
2590 Female, age 75, unknown 35.7
1851 Male, age 51, unknown 35.0
1916 Female, age 42, unknown 34.6
1889 Female, age 72, unknown 33.6
2241 Male, age 72, unknown 31.4
Superior colliculus
nTPM: 36.9
2664 Male, age 75, both hemispheres 39.0
1913 Female, age 42, unknown 38.9
1839 Male, age 51, unknown 38.6
1895 Male, age 76, right hemisphere 37.0
1796 Male, age 53, unknown 36.9
1995 Male, age 72, unknown 36.9
2587 Male, age 74, left hemisphere 36.4
2261 Male, age 18, unknown 35.7
2087 Female, age 72, unknown 35.5
2668 Female, age 75, unknown 33.9
Ventral tegmental area
nTPM: 35.5
2223 Female, age 72, unknown 39.6
2218 Male, age 76, both hemispheres 36.5
2021 Male, age 53, unknown 35.5
1915 Female, age 42, unknown 34.3
1942 Male, age 51, unknown 33.6
2410 Female, age 72, unknown 33.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 139

Max nTPM: 51.6
Min nTPM: 19.6
Std nTPM: 4.8
Median nTPM: 29.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 51.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 41.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 40.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 40.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 39.9
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 39.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 39.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 38.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 37.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.9
FF:10158-103A5 76 years, female 44.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.8
Pig sample Sample description nTPM
Midbrain
nTPM: 30.8
Samples: 4

Max nTPM: 36.3
Min nTPM: 27.2
Sample A Female 36.3
Sample B Female 27.2
Sample C Male 29.9
Sample D Male 29.7
Periaqueductal gray
nTPM: 28.5
Samples: 3

Max nTPM: 30.3
Min nTPM: 26.5
Sample B Female 26.5
Sample C Male 30.3
Sample D Male 28.7
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 32.3
Min nTPM: 26.2
Sample A Female 29.7
Sample B Female 26.2
Sample C Male 31.4
Sample D Male 32.3
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 32.1
Min nTPM: 24.7
Sample A Female 30.9
Sample B Female 24.7
Sample C Male 28.5
Sample D Male 32.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 33.7
Min nTPM: 28.8
Sample A Male 32.1
Sample B Male 28.9
Sample C Female 33.7
Sample D Female 28.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
70445502 Antisense, RP_050614_04_A03, Mouse strain C57BL/6J (56 days, male) 5.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.