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EI24
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:62.5 nTPM
HPA:62.5 nTPM
GTEx:46.1 nTPM
FANTOM5:41.6 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:111.8 nTPM
Allen mouse:11.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047165Antibody HPA051029
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 60.3
2846 Female, age 79, unknown 64.5
1857 Female, age 85, left hemisphere 61.9
2290 Female, age 72, unknown 61.7
1854 Male, age 80, left hemisphere 61.4
1781 Male, age 74, unknown 59.7
2481 Female, age 94, left hemisphere 59.2
2288 Male, age 75, left hemisphere 57.6
2289 Male, age 61, right hemisphere 56.4
Claustrum
nTPM: 58.6
2196 Female, age 79, unknown 60.0
1956 Male, age 74, unknown 59.6
2198 Male, age 80, both hemispheres 59.6
2491 Male, age 75, both hemispheres 59.1
2568 Male, age 61, both hemispheres 58.6
2292 Female, age 85, both hemispheres 58.4
2392 Female, age 94, both hemispheres 58.3
2645 Female, age 72, unknown 57.3
2284 Female, age 91, both hemispheres 56.6
Globus pallidus, externus
nTPM: 62.3
2567 Female, age 72, unknown 65.1
2395 Male, age 75, both hemispheres 62.8
1996 Male, age 80, right hemisphere 61.7
2772 Female, age 79, unknown 61.3
2646 Male, age 61, right hemisphere 60.7
Globus pallidus, internus
nTPM: 62.5
2287 Male, age 75, right hemisphere 65.4
2111 Female, age 85, right hemisphere 64.1
2483 Female, age 94, right hemisphere 63.8
2566 Female, age 72, unknown 62.3
2778 Female, age 91, both hemispheres 61.8
2037 Male, age 80, right hemisphere 60.3
1818 Male, age 74, unknown 59.9
Nucleus accumbens
nTPM: 60.7
1783 Male, age 74, unknown 65.5
2698 Female, age 72, unknown 62.9
1806 Female, age 85, left hemisphere 61.8
1856 Female, age 91, right hemisphere 61.5
2824 Male, age 61, right hemisphere 59.5
2286 Male, age 75, left hemisphere 58.8
2391 Female, age 94, left hemisphere 58.0
2732 Male, age 80, right hemisphere 57.5
Nucleus basalis of Meynert
nTPM: 60.7
2569 Male, age 61, both hemispheres 63.2
2393 Male, age 80, right hemisphere 61.8
2484 Female, age 94, left hemisphere 59.7
2821 Male, age 75, both hemispheres 58.1
Nucleus of the diagonal band
nTPM: 60.1
2775 Male, age 80, right hemisphere 63.1
1812 Female, age 91, both hemispheres 60.8
2029 Male, age 61, right hemisphere 60.4
2195 Female, age 85, both hemispheres 59.1
1979 Male, age 74, unknown 56.9
Olfactory tubercle
nTPM: 59.1
1846 Male, age 80, right hemisphere 61.8
2487 Female, age 94, left hemisphere 59.2
1998 Female, age 91, both hemispheres 57.9
2856 Male, age 75, right hemisphere 57.7
Putamen
nTPM: 62.0
2647 Male, age 75, left hemisphere 65.5
2466 Female, age 79, unknown 63.8
1829 Male, age 74, unknown 63.7
2489 Female, age 72, unknown 62.8
1838 Male, age 80, right hemisphere 60.3
2482 Female, age 94, left hemisphere 59.4
1937 Female, age 91, right hemisphere 58.7
Septal nuclei
nTPM: 58.7
1960 Male, age 74, unknown 62.2
2031 Female, age 72, unknown 61.1
2629 Female, age 94, right hemisphere 58.8
2059 Female, age 85, both hemispheres 58.0
2394 Male, age 61, left hemisphere 57.9
2009 Female, age 91, both hemispheres 56.9
2199 Male, age 80, right hemisphere 56.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.9
Samples: 246

Max nTPM: 63.8
Min nTPM: 27.0
Std nTPM: 6.4
Median nTPM: 42.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 63.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 60.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 60.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 59.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 59.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 59.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 59.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 58.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 55.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 55.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 45.8
Samples: 246

Max nTPM: 66.9
Min nTPM: 30.0
Std nTPM: 6.5
Median nTPM: 45.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 66.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 63.9
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 63.2
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 62.2
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 61.1
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 61.1
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 60.2
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 59.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 58.4
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 58.2
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 57.4
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Brain - Putamen (basal ganglia)
Average nTPM: 46.1
Samples: 205

Max nTPM: 67.3
Min nTPM: 31.9
Std nTPM: 6.2
Median nTPM: 45.6
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 67.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 62.7
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 60.9
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 60.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 60.7
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 59.8
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 59.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 58.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 58.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 57.4
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 57.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.2
FF:10164-103B2 76 years, female 37.2
Globus pallidus
Scaled Tags Per Million: 33.8
FF:10175-103C4 60 years, female 41.0
FF:10161-103A8 76 years, female 26.5
Nucleus accumbens
Scaled Tags Per Million: 41.6
FF:10037-101F1 23-56 years, mixed 41.6
Putamen
Scaled Tags Per Million: 34.3
FF:10176-103C5 60 years, female 34.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.1
Pig sample Sample description nTPM
Caudate
nTPM: 17.1
Samples: 4

Max nTPM: 20.2
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 16.0
Sample C Male 20.2
Sample D Male 16.4
Putamen
nTPM: 21.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.6
Sample A Female 20.5
Sample B Female 18.6
Sample C Male 24.1
Sample D Male 21.1
Septum
nTPM: 19.8
Samples: 4

Max nTPM: 22.2
Min nTPM: 17.6
Sample A Female 19.5
Sample B Female 19.7
Sample C Male 22.2
Sample D Male 17.6
Ventral pallidum
nTPM: 18.6
Samples: 4

Max nTPM: 22.3
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 18.3
Sample C Male 22.3
Sample D Male 17.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 111.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 111.8
Samples: 4

Max nTPM: 118.6
Min nTPM: 104.3
Sample A Male 107.6
Sample B Male 104.3
Sample C Female 116.7
Sample D Female 118.6
Septum
nTPM: 101.9
Samples: 4

Max nTPM: 108.4
Min nTPM: 91.2
Sample A Male 91.2
Sample B Male 105.9
Sample C Female 108.4
Sample D Female 102.1
Ventral forebrain
nTPM: 108.4
Samples: 4

Max nTPM: 124.0
Min nTPM: 99.3
Sample A Male 99.3
Sample B Male 102.9
Sample C Female 124.0
Sample D Female 107.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.3
2179 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 11.3
2180 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 8.9
2179 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 8.9
2180 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 0.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.