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EI24
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:60.2 nTPM
HPA:60.2 nTPM
GTEx:41.7 nTPM
FANTOM5:26.2 Scaled Tags Per Million
Pig:21.9 nTPM
Mouse:107.8 nTPM
Allen mouse:13.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA047165Antibody HPA051029
Glial cells LowNot detected
Neuronal cells LowLow



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 60.2
Sample id Sample description nTPM
Hippocampus
nTPM: 58.5
1898 Male, age 80, left hemisphere 62.1
2621 Female, age 67, right hemisphere 59.9
2148 Female, age 91, left hemisphere 58.7
1855 Male, age 76, left hemisphere 58.0
2529 Female, age 94, left hemisphere 56.5
1911 Female, age 85, right hemisphere 55.6
Dentate gyrus
nTPM: 58.4
2010 Male, age 76, both hemispheres 60.5
2530 Female, age 94, left hemisphere 59.3
2531 Female, age 67, both hemispheres 59.2
1927 Female, age 91, both hemispheres 58.3
2528 Male, age 74, both hemispheres 56.9
2246 Female, age 85, both hemispheres 56.3
Entorhinal gyrus
nTPM: 60.2
2764 Male, age 80, right hemisphere 61.5
2613 Female, age 94, left hemisphere 61.0
1938 Female, age 85, left hemisphere 60.5
2686 Male, age 75, right hemisphere 60.2
2117 Female, age 91, right hemisphere 59.1
1787 Male, age 76, left hemisphere 59.0
Hippocampus, CA1
nTPM: 58.5
2749 Male, age 80, left hemisphere 64.1
2045 Male, age 76, both hemispheres 60.2
1873 Female, age 85, both hemispheres 58.1
2527 Male, age 74, both hemispheres 56.9
2082 Female, age 91, right hemisphere 53.3
Hippocampus, CA2
nTPM: 58.5
1963 Male, age 80, left hemisphere 63.5
1892 Male, age 76, both hemispheres 60.6
2437 Female, age 94, left hemisphere 59.4
1940 Female, age 85, left hemisphere 55.9
2113 Female, age 91, right hemisphere 55.9
2249 Male, age 74, both hemispheres 55.4
Hippocampus, CA3
nTPM: 59.0
2137 Male, age 80, left hemisphere 61.0
1867 Male, age 76, both hemispheres 60.6
2861 Female, age 67, both hemispheres 60.3
2620 Female, age 94, left hemisphere 58.0
1891 Female, age 85, both hemispheres 57.8
2436 Male, age 74, both hemispheres 56.4
Parahippocampal cortex
nTPM: 58.1
2018 Male, age 76, both hemispheres 61.3
1850 Male, age 80, both hemispheres 60.7
2532 Female, age 72, left hemisphere 59.4
1990 Female, age 91, right hemisphere 58.3
1933 Female, age 85, both hemispheres 58.0
2693 Female, age 94, both hemispheres 57.4
2245 Female, age 91, both hemispheres 57.3
2250 Female, age 67, right hemisphere 56.9
2692 Male, age 74, both hemispheres 56.9
2622 Female, age 67, right hemisphere 55.2
Perirhinal gyrus
nTPM: 60.2
1794 Male, age 80, right hemisphere 62.1
1847 Female, age 91, left hemisphere 60.0
2521 Female, age 94, right hemisphere 59.8
1841 Female, age 85, right hemisphere 59.7
2848 Male, age 76, right hemisphere 59.2
Subiculum
nTPM: 57.2
1977 Female, age 85, both hemispheres 61.0
1901 Male, age 80, both hemispheres 57.9
2619 Male, age 74, both hemispheres 57.7
2042 Male, age 76, both hemispheres 57.6
2438 Female, age 94, left hemisphere 54.8
2729 Female, age 91, right hemisphere 54.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.7
Samples: 197

Max nTPM: 65.6
Min nTPM: 26.2
Std nTPM: 6.3
Median nTPM: 41.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 65.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 63.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 61.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 61.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 58.6
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 58.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 56.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 55.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 55.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 52.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 52.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.2
FF:10153-102I9 76 years, female 30.4
FF:10169-103B7 60 years, female 21.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 18.1
Samples: 4

Max nTPM: 20.9
Min nTPM: 14.2
Sample A Female 20.9
Sample B Female 18.7
Sample C Male 18.4
Sample D Male 14.2
Entorhinal cortex
nTPM: 21.9
Samples: 4

Max nTPM: 23.2
Min nTPM: 20.9
Sample A Female 22.1
Sample B Female 23.2
Sample C Male 21.4
Sample D Male 20.9
Subiculum
nTPM: 18.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.3
Sample A Female 24.1
Sample B Female 17.3
Sample C Male 17.7
Sample D Male 16.3
Ventral hippocampus
nTPM: 17.0
Samples: 4

Max nTPM: 19.3
Min nTPM: 13.6
Sample A Female 17.6
Sample B Female 13.6
Sample C Male 19.3
Sample D Male 17.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 107.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 107.8
Samples: 4

Max nTPM: 111.7
Min nTPM: 104.7
Sample A Male 107.1
Sample B Male 107.5
Sample C Female 104.7
Sample D Female 111.7
Hippocampal formation
nTPM: 100.9
Samples: 4

Max nTPM: 112.8
Min nTPM: 95.5
Sample A Male 112.8
Sample B Male 96.4
Sample C Female 98.9
Sample D Female 95.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.0
2179 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 13.0
2180 Antisense, RP_Baylor_102751, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.