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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:958.7 nTPM
HPA:958.7 nTPM
GTEx:858.5 nTPM
FANTOM5:448.5 Scaled Tags Per Million
Mouse:395.1 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 958.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 939.5
2586 Male, age 75, left hemisphere 967.8
2828 Female, age 72, unknown 947.6
2411 Female, age 72, unknown 946.9
2019 Male, age 18, unknown 944.3
2666 Male, age 74, left hemisphere 943.0
1833 Male, age 53, unknown 937.5
1870 Female, age 42, unknown 937.3
1827 Male, age 72, unknown 934.6
1830 Male, age 51, unknown 927.2
2219 Male, age 76, both hemispheres 909.0
Dorsal raphe nucleus
nTPM: 927.3
2298 Female, age 72, unknown 939.5
2750 Male, age 76, both hemispheres 931.5
2016 Female, age 72, unknown 928.6
1828 Male, age 53, unknown 925.5
2047 Male, age 72, unknown 911.5
Inferior colliculus
nTPM: 914.3
1890 Male, age 53, unknown 928.2
2097 Female, age 72, unknown 913.5
1848 Female, age 42, unknown 911.6
2849 Male, age 72, unknown 903.8
Median raphe nucleus
nTPM: 908.7
2220 Male, age 76, midline 908.7
Pedunculopontine tegmental nucleus
nTPM: 939.4
2334 Male, age 80, both hemispheres 957.7
2338 Male, age 61, both hemispheres 956.6
1921 Female, age 85, both hemispheres 904.0
Periaquaductal grey, anterior
nTPM: 938.9
2502 Female, age 75, unknown 975.6
1795 Male, age 51, unknown 928.3
1947 Male, age 18, unknown 912.8
Periaquaductal grey, dorsal
nTPM: 907.9
1831 Male, age 72, unknown 910.4
2464 Female, age 72, unknown 909.8
1840 Male, age 53, unknown 909.3
2850 Male, age 76, both hemispheres 901.9
Periaquaductal grey, lateral
nTPM: 910.7
2053 Male, age 18, unknown 917.4
2140 Male, age 76, both hemispheres 910.7
2272 Male, age 74, both hemispheres 904.0
Pretectal area
nTPM: 921.6
2007 Male, age 72, unknown 943.1
1815 Male, age 53, unknown 936.5
1817 Female, age 42, unknown 936.1
2316 Male, age 76, right hemisphere 932.6
1816 Male, age 51, unknown 924.7
2825 Male, age 18, unknown 918.7
1944 Female, age 72, unknown 918.0
2224 Female, age 72, unknown 911.6
2407 Male, age 75, both hemispheres 908.9
2273 Male, age 74, both hemispheres 905.1
2667 Female, age 75, unknown 902.3
Red nucleus
nTPM: 958.7
2503 Female, age 72, unknown 1008.7
1865 Male, age 51, unknown 971.9
2227 Male, age 72, unknown 969.4
1821 Female, age 72, unknown 968.9
1904 Male, age 53, unknown 966.3
2769 Male, age 72, unknown 964.3
2785 Male, age 18, unknown 955.4
2588 Male, age 74, left hemisphere 953.5
2725 Female, age 75, unknown 946.9
2584 Male, age 75, left hemisphere 939.7
1954 Female, age 42, unknown 937.3
2823 Male, age 76, right hemisphere 922.6
Substantia nigra
nTPM: 952.4
1851 Male, age 51, unknown 996.5
2699 Male, age 18, unknown 990.2
2409 Female, age 72, unknown 986.2
2665 Male, age 74, both hemispheres 965.2
1916 Female, age 42, unknown 957.8
2590 Female, age 75, unknown 950.5
1889 Female, age 72, unknown 940.1
2583 Male, age 75, right hemisphere 915.5
1941 Male, age 53, unknown 913.9
2241 Male, age 72, unknown 907.5
Superior colliculus
nTPM: 935.5
1995 Male, age 72, unknown 973.2
2587 Male, age 74, left hemisphere 970.9
1913 Female, age 42, unknown 962.9
1796 Male, age 53, unknown 941.7
2664 Male, age 75, both hemispheres 933.6
2668 Female, age 75, unknown 930.1
2261 Male, age 18, unknown 918.2
2087 Female, age 72, unknown 915.8
1839 Male, age 51, unknown 913.2
1895 Male, age 76, right hemisphere 895.1
Ventral tegmental area
nTPM: 937.9
1915 Female, age 42, unknown 972.5
2410 Female, age 72, unknown 946.2
2223 Female, age 72, unknown 940.3
2021 Male, age 53, unknown 929.2
1942 Male, age 51, unknown 925.0
2218 Male, age 76, both hemispheres 914.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 858.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 858.5
Samples: 139

Max nTPM: 2511.9
Min nTPM: 335.6
Std nTPM: 311.3
Median nTPM: 811.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2511.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2100.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1831.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1517.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1430.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1401.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1374.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1373.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1327.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1324.1
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1307.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 448.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 448.5
FF:10158-103A5 76 years, female 448.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 395.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 395.1
Samples: 4

Max nTPM: 495.7
Min nTPM: 330.6
Sample A Male 495.7
Sample B Male 359.4
Sample C Female 330.6
Sample D Female 394.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
74580990 Antisense, RP_060215_02_C09, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

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