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VPS26B
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:40.8 nTPM
HPA:40.8 nTPM
GTEx:39.4 nTPM
FANTOM5:101.0 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:81.4 nTPM
Allen mouse:2.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038172
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.8
1857 Female, age 85, left hemisphere 41.7
1854 Male, age 80, left hemisphere 37.9
2290 Female, age 72, unknown 37.6
2846 Female, age 79, unknown 37.3
1781 Male, age 74, unknown 36.3
2289 Male, age 61, right hemisphere 35.2
2481 Female, age 94, left hemisphere 34.2
2288 Male, age 75, left hemisphere 34.0
Claustrum
nTPM: 36.1
2198 Male, age 80, both hemispheres 38.9
2491 Male, age 75, both hemispheres 38.4
2568 Male, age 61, both hemispheres 38.3
2645 Female, age 72, unknown 37.9
1956 Male, age 74, unknown 37.4
2284 Female, age 91, both hemispheres 35.8
2392 Female, age 94, both hemispheres 34.0
2196 Female, age 79, unknown 33.8
2292 Female, age 85, both hemispheres 30.8
Globus pallidus, externus
nTPM: 28.8
2772 Female, age 79, unknown 31.6
2395 Male, age 75, both hemispheres 29.0
1996 Male, age 80, right hemisphere 28.4
2646 Male, age 61, right hemisphere 27.8
2567 Female, age 72, unknown 27.0
Globus pallidus, internus
nTPM: 27.9
2483 Female, age 94, right hemisphere 31.2
2287 Male, age 75, right hemisphere 30.8
2778 Female, age 91, both hemispheres 28.1
2037 Male, age 80, right hemisphere 27.8
2566 Female, age 72, unknown 26.6
1818 Male, age 74, unknown 26.5
2111 Female, age 85, right hemisphere 24.1
Nucleus accumbens
nTPM: 35.3
1856 Female, age 91, right hemisphere 41.1
1783 Male, age 74, unknown 40.4
1806 Female, age 85, left hemisphere 39.0
2824 Male, age 61, right hemisphere 35.3
2286 Male, age 75, left hemisphere 34.1
2698 Female, age 72, unknown 33.0
2391 Female, age 94, left hemisphere 30.3
2732 Male, age 80, right hemisphere 29.6
Nucleus basalis of Meynert
nTPM: 31.5
2484 Female, age 94, left hemisphere 34.6
2393 Male, age 80, right hemisphere 31.9
2821 Male, age 75, both hemispheres 30.1
2569 Male, age 61, both hemispheres 29.4
Nucleus of the diagonal band
nTPM: 40.8
2775 Male, age 80, right hemisphere 43.2
2029 Male, age 61, right hemisphere 42.6
2195 Female, age 85, both hemispheres 42.2
1812 Female, age 91, both hemispheres 41.4
1979 Male, age 74, unknown 34.6
Olfactory tubercle
nTPM: 40.2
1998 Female, age 91, both hemispheres 43.2
1846 Male, age 80, right hemisphere 41.8
2487 Female, age 94, left hemisphere 39.3
2856 Male, age 75, right hemisphere 36.5
Putamen
nTPM: 35.8
1838 Male, age 80, right hemisphere 38.5
2466 Female, age 79, unknown 38.0
1937 Female, age 91, right hemisphere 37.0
2647 Male, age 75, left hemisphere 36.3
1829 Male, age 74, unknown 34.2
2482 Female, age 94, left hemisphere 33.5
2489 Female, age 72, unknown 33.4
Septal nuclei
nTPM: 38.3
1960 Male, age 74, unknown 50.1
2031 Female, age 72, unknown 44.7
2059 Female, age 85, both hemispheres 39.4
2009 Female, age 91, both hemispheres 37.1
2629 Female, age 94, right hemisphere 37.1
2199 Male, age 80, right hemisphere 29.9
2394 Male, age 61, left hemisphere 29.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 35.2
Samples: 246

Max nTPM: 57.2
Min nTPM: 18.8
Std nTPM: 7.9
Median nTPM: 34.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 57.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 52.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 52.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 51.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 51.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 51.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 50.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 50.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 61.9
Min nTPM: 17.1
Std nTPM: 9.2
Median nTPM: 41.1
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 61.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 58.5
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 56.2
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 56.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 55.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 55.2
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 54.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 53.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 53.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 53.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 53.6
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Brain - Putamen (basal ganglia)
Average nTPM: 34.2
Samples: 205

Max nTPM: 55.5
Min nTPM: 20.3
Std nTPM: 7.5
Median nTPM: 32.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 55.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 52.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 51.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 50.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 50.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 50.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 49.9
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 49.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 49.5
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 48.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 48.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 80.3
FF:10164-103B2 76 years, female 80.3
Globus pallidus
Scaled Tags Per Million: 43.2
FF:10161-103A8 76 years, female 46.2
FF:10175-103C4 60 years, female 40.2
Nucleus accumbens
Scaled Tags Per Million: 95.2
FF:10037-101F1 23-56 years, mixed 95.2
Putamen
Scaled Tags Per Million: 101.0
FF:10176-103C5 60 years, female 101.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Caudate
nTPM: 20.1
Samples: 4

Max nTPM: 22.9
Min nTPM: 16.1
Sample A Female 16.1
Sample B Female 22.4
Sample C Male 22.9
Sample D Male 18.9
Putamen
nTPM: 19.7
Samples: 4

Max nTPM: 23.4
Min nTPM: 17.0
Sample A Female 17.0
Sample B Female 18.0
Sample C Male 23.4
Sample D Male 20.4
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 17.7
Sample A Female 20.3
Sample B Female 20.5
Sample C Male 22.0
Sample D Male 17.7
Ventral pallidum
nTPM: 20.3
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.3
Sample A Female 17.3
Sample B Female 20.4
Sample C Male 25.1
Sample D Male 18.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 81.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 81.4
Samples: 4

Max nTPM: 83.7
Min nTPM: 77.7
Sample A Male 83.7
Sample B Male 82.0
Sample C Female 77.7
Sample D Female 82.2
Septum
nTPM: 68.5
Samples: 4

Max nTPM: 72.7
Min nTPM: 62.5
Sample A Male 68.0
Sample B Male 70.7
Sample C Female 72.7
Sample D Female 62.5
Ventral forebrain
nTPM: 71.5
Samples: 4

Max nTPM: 78.1
Min nTPM: 65.3
Sample A Male 65.3
Sample B Male 73.0
Sample C Female 78.1
Sample D Female 69.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
68745263 Antisense, RP_050210_01_E12, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 1.2
68745263 Antisense, RP_050210_01_E12, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.