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GABRA2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA:29.9 nTPM
GTEx:31.8 nTPM
FANTOM5:313.9 Scaled Tags Per Million
Pig:94.0 nTPM
Mouse:58.4 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.2
2481 Female, age 94, left hemisphere 39.1
2290 Female, age 72, unknown 29.4
1857 Female, age 85, left hemisphere 27.3
2288 Male, age 75, left hemisphere 26.3
1854 Male, age 80, left hemisphere 22.0
2289 Male, age 61, right hemisphere 16.7
2846 Female, age 79, unknown 14.6
1781 Male, age 74, unknown 10.0
Claustrum
nTPM: 10.1
2568 Male, age 61, both hemispheres 14.2
2198 Male, age 80, both hemispheres 14.1
2392 Female, age 94, both hemispheres 11.1
2491 Male, age 75, both hemispheres 10.5
2645 Female, age 72, unknown 10.0
2284 Female, age 91, both hemispheres 9.3
1956 Male, age 74, unknown 9.0
2196 Female, age 79, unknown 7.6
2292 Female, age 85, both hemispheres 4.6
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 1.1
2483 Female, age 94, right hemisphere 8.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 21.2
2286 Male, age 75, left hemisphere 37.3
1806 Female, age 85, left hemisphere 25.6
2824 Male, age 61, right hemisphere 25.3
1856 Female, age 91, right hemisphere 21.1
1783 Male, age 74, unknown 18.6
2391 Female, age 94, left hemisphere 16.2
2698 Female, age 72, unknown 15.0
2732 Male, age 80, right hemisphere 10.4
Nucleus basalis of Meynert
nTPM: 6.8
2393 Male, age 80, right hemisphere 16.0
2484 Female, age 94, left hemisphere 8.8
2821 Male, age 75, both hemispheres 2.6
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 29.9
2775 Male, age 80, right hemisphere 39.1
2195 Female, age 85, both hemispheres 32.9
1812 Female, age 91, both hemispheres 29.7
2029 Male, age 61, right hemisphere 25.2
1979 Male, age 74, unknown 22.7
Olfactory tubercle
nTPM: 23.6
1846 Male, age 80, right hemisphere 28.6
2856 Male, age 75, right hemisphere 24.8
2487 Female, age 94, left hemisphere 23.5
1998 Female, age 91, both hemispheres 17.5
Putamen
nTPM: 15.6
1838 Male, age 80, right hemisphere 23.6
2482 Female, age 94, left hemisphere 21.5
1937 Female, age 91, right hemisphere 19.5
1829 Male, age 74, unknown 14.9
2466 Female, age 79, unknown 14.4
2647 Male, age 75, left hemisphere 8.1
2489 Female, age 72, unknown 7.5
Septal nuclei
nTPM: 22.8
1960 Male, age 74, unknown 36.4
2031 Female, age 72, unknown 29.5
2009 Female, age 91, both hemispheres 28.8
2059 Female, age 85, both hemispheres 27.3
2629 Female, age 94, right hemisphere 21.0
2199 Male, age 80, right hemisphere 10.0
2394 Male, age 61, left hemisphere 6.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 31.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.8
Samples: 246

Max nTPM: 91.0
Min nTPM: 6.7
Std nTPM: 10.2
Median nTPM: 31.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 91.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 60.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 56.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 56.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 54.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 53.4
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 51.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 50.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 50.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 50.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 49.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 30.3
Samples: 246

Max nTPM: 79.6
Min nTPM: 4.3
Std nTPM: 11.7
Median nTPM: 30.3
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 79.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 72.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 63.0
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 58.5
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 58.2
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 58.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 56.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 55.8
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 50.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 50.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 50.2
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Brain - Putamen (basal ganglia)
Average nTPM: 27.9
Samples: 205

Max nTPM: 82.1
Min nTPM: 7.6
Std nTPM: 10.4
Median nTPM: 26.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 82.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 79.1
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 59.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 52.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 49.7
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 49.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 48.7
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 47.3
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 45.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 45.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 44.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 313.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 230.8
FF:10164-103B2 76 years, female 230.8
Globus pallidus
Scaled Tags Per Million: 120.3
FF:10175-103C4 60 years, female 183.9
FF:10161-103A8 76 years, female 56.7
Nucleus accumbens
Scaled Tags Per Million: 196.1
FF:10037-101F1 23-56 years, mixed 196.1
Putamen
Scaled Tags Per Million: 313.9
FF:10176-103C5 60 years, female 313.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 94.0
Pig sample Sample description nTPM
Caudate
nTPM: 85.7
Samples: 4

Max nTPM: 95.5
Min nTPM: 72.7
Sample A Female 83.5
Sample B Female 72.7
Sample C Male 95.5
Sample D Male 91.2
Putamen
nTPM: 94.0
Samples: 4

Max nTPM: 163.5
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 75.5
Sample C Male 163.5
Sample D Male 80.8
Septum
nTPM: 72.7
Samples: 4

Max nTPM: 80.6
Min nTPM: 60.4
Sample A Female 80.6
Sample B Female 77.2
Sample C Male 60.4
Sample D Male 72.6
Ventral pallidum
nTPM: 75.5
Samples: 4

Max nTPM: 98.6
Min nTPM: 66.5
Sample A Female 98.6
Sample B Female 69.6
Sample C Male 66.5
Sample D Male 67.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 58.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 54.2
Samples: 4

Max nTPM: 57.6
Min nTPM: 51.6
Sample A Male 53.3
Sample B Male 51.6
Sample C Female 57.6
Sample D Female 54.3
Septum
nTPM: 58.4
Samples: 4

Max nTPM: 65.4
Min nTPM: 51.4
Sample A Male 51.4
Sample B Male 65.4
Sample C Female 55.2
Sample D Female 61.4
Ventral forebrain
nTPM: 49.5
Samples: 4

Max nTPM: 53.5
Min nTPM: 45.5
Sample A Male 52.7
Sample B Male 45.5
Sample C Female 46.4
Sample D Female 53.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
74988690 Antisense, RP_060315_04_A07, Mouse strain C57BL/6J (56 days, male) 0.1
70593139 Antisense, RP_050331_02_B12, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
74988690 Antisense, RP_060315_04_A07, Mouse strain C57BL/6J (56 days, male) 0.0
70593139 Antisense, RP_050331_02_B12, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.