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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.3 nTPM
HPA:55.3 nTPM
GTEx:13.3 nTPM
FANTOM5:38.1 Scaled Tags Per Million
Pig:114.0 nTPM
Mouse:9.5 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
2219 Male, age 76, both hemispheres 120.9
2828 Female, age 72, unknown 24.6
1827 Male, age 72, unknown 23.5
2019 Male, age 18, unknown 23.3
2666 Male, age 74, left hemisphere 15.4
1870 Female, age 42, unknown 9.8
2586 Male, age 75, left hemisphere 5.7
1830 Male, age 51, unknown 1.6
2411 Female, age 72, unknown 1.0
1833 Male, age 53, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 5.0
1848 Female, age 42, unknown 9.1
1890 Male, age 53, unknown 6.8
2849 Male, age 72, unknown 3.5
2097 Female, age 72, unknown 0.6
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 15.4
1921 Female, age 85, both hemispheres 34.8
2338 Male, age 61, both hemispheres 7.0
2334 Male, age 80, both hemispheres 4.3
Periaquaductal grey, anterior
nTPM: 31.3
1795 Male, age 51, unknown 70.0
2502 Female, age 75, unknown 16.2
1947 Male, age 18, unknown 7.7
Periaquaductal grey, dorsal
nTPM: 34.4
1831 Male, age 72, unknown 99.0
2850 Male, age 76, both hemispheres 21.5
1840 Male, age 53, unknown 15.8
2464 Female, age 72, unknown 1.4
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 37.2
2272 Male, age 74, both hemispheres 21.8
2140 Male, age 76, both hemispheres 10.5
Pretectal area
nTPM: 55.3
1816 Male, age 51, unknown 109.7
1944 Female, age 72, unknown 76.4
1815 Male, age 53, unknown 71.3
1817 Female, age 42, unknown 71.2
2273 Male, age 74, both hemispheres 65.9
2007 Male, age 72, unknown 53.7
2316 Male, age 76, right hemisphere 45.6
2407 Male, age 75, both hemispheres 44.5
2667 Female, age 75, unknown 42.7
2224 Female, age 72, unknown 14.5
2825 Male, age 18, unknown 12.3
Red nucleus
nTPM: 4.2
2785 Male, age 18, unknown 28.1
2725 Female, age 75, unknown 7.6
2588 Male, age 74, left hemisphere 7.5
2503 Female, age 72, unknown 3.0
2584 Male, age 75, left hemisphere 2.0
2823 Male, age 76, right hemisphere 1.0
1904 Male, age 53, unknown 0.7
1954 Female, age 42, unknown 0.6
1821 Female, age 72, unknown 0.3
2769 Male, age 72, unknown 0.1
1865 Male, age 51, unknown 0.0
2227 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 7.4
1889 Female, age 72, unknown 33.4
1941 Male, age 53, unknown 17.6
2665 Male, age 74, both hemispheres 13.2
2590 Female, age 75, unknown 5.6
2583 Male, age 75, right hemisphere 1.9
2409 Female, age 72, unknown 1.7
1851 Male, age 51, unknown 1.2
1916 Female, age 42, unknown 0.0
2241 Male, age 72, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 39.6
2087 Female, age 72, unknown 58.3
2261 Male, age 18, unknown 53.9
1995 Male, age 72, unknown 47.1
1839 Male, age 51, unknown 46.8
1913 Female, age 42, unknown 45.5
2664 Male, age 75, both hemispheres 37.0
2587 Male, age 74, left hemisphere 32.5
1796 Male, age 53, unknown 31.3
2668 Female, age 75, unknown 29.1
1895 Male, age 76, right hemisphere 14.6
Ventral tegmental area
nTPM: 1.5
2218 Male, age 76, both hemispheres 2.9
2021 Male, age 53, unknown 2.8
2410 Female, age 72, unknown 2.2
1915 Female, age 42, unknown 1.4
1942 Male, age 51, unknown 0.0
2223 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 54.5
Min nTPM: 4.0
Std nTPM: 7.5
Median nTPM: 11.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 54.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 47.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 39.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 34.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 32.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 30.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 27.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 25.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 24.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.1
FF:10158-103A5 76 years, female 38.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 114.0
Pig sample Sample description nTPM
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 148.2
Min nTPM: 8.3
Sample A Female 80.5
Sample B Female 8.7
Sample C Male 148.2
Sample D Male 8.3
Periaqueductal gray
nTPM: 22.3
Samples: 3

Max nTPM: 46.9
Min nTPM: 7.0
Sample B Female 12.9
Sample C Male 7.0
Sample D Male 46.9
Substantia nigra
nTPM: 25.8
Samples: 4

Max nTPM: 64.2
Min nTPM: 9.3
Sample A Female 12.6
Sample B Female 64.2
Sample C Male 9.3
Sample D Male 17.2
Superior colliculi
nTPM: 114.0
Samples: 4

Max nTPM: 218.3
Min nTPM: 37.7
Sample A Female 70.8
Sample B Female 218.3
Sample C Male 129.2
Sample D Male 37.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.5
Samples: 4

Max nTPM: 11.2
Min nTPM: 7.8
Sample A Male 11.2
Sample B Male 8.2
Sample C Female 10.9
Sample D Female 7.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
79677351 Antisense, RP_071204_02_A06, Mouse strain C57BL/6J (56 days, male) 0.9
72103843 Antisense, RP_051017_03_A02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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