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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:16.7 nTPM
FANTOM5:52.6 Scaled Tags Per Million
Pig:15.0 nTPM
Mouse:5.9 nTPM
Allen mouse:0.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004098
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Hippocampus
nTPM: 13.6
2148 Female, age 91, left hemisphere 19.1
2621 Female, age 67, right hemisphere 16.5
2529 Female, age 94, left hemisphere 15.7
1911 Female, age 85, right hemisphere 11.6
1855 Male, age 76, left hemisphere 10.6
1898 Male, age 80, left hemisphere 7.9
Dentate gyrus
nTPM: 12.5
2530 Female, age 94, left hemisphere 23.1
2528 Male, age 74, both hemispheres 21.1
2246 Female, age 85, both hemispheres 10.1
2531 Female, age 67, both hemispheres 9.9
1927 Female, age 91, both hemispheres 6.8
2010 Male, age 76, both hemispheres 3.9
Entorhinal gyrus
nTPM: 4.7
2117 Female, age 91, right hemisphere 13.4
2686 Male, age 75, right hemisphere 8.8
1787 Male, age 76, left hemisphere 2.5
2613 Female, age 94, left hemisphere 1.6
2764 Male, age 80, right hemisphere 1.2
1938 Female, age 85, left hemisphere 0.8
Hippocampus, CA1
nTPM: 9.3
2527 Male, age 74, both hemispheres 19.2
2082 Female, age 91, right hemisphere 14.8
1873 Female, age 85, both hemispheres 9.1
2045 Male, age 76, both hemispheres 1.9
2749 Male, age 80, left hemisphere 1.6
Hippocampus, CA2
nTPM: 9.9
2249 Male, age 74, both hemispheres 19.7
2113 Female, age 91, right hemisphere 19.2
2437 Female, age 94, left hemisphere 13.1
1963 Male, age 80, left hemisphere 6.1
1940 Female, age 85, left hemisphere 0.7
1892 Male, age 76, both hemispheres 0.3
Hippocampus, CA3
nTPM: 9.5
2436 Male, age 74, both hemispheres 18.6
2620 Female, age 94, left hemisphere 11.1
2861 Female, age 67, both hemispheres 10.8
1891 Female, age 85, both hemispheres 8.5
2137 Male, age 80, left hemisphere 5.9
1867 Male, age 76, both hemispheres 2.4
Parahippocampal cortex
nTPM: 3.3
2692 Male, age 74, both hemispheres 8.1
2245 Female, age 91, both hemispheres 7.1
1990 Female, age 91, right hemisphere 6.8
2250 Female, age 67, right hemisphere 5.4
2622 Female, age 67, right hemisphere 2.7
2018 Male, age 76, both hemispheres 1.7
2693 Female, age 94, both hemispheres 0.7
2532 Female, age 72, left hemisphere 0.4
1850 Male, age 80, both hemispheres 0.0
1933 Female, age 85, both hemispheres 0.0
Perirhinal gyrus
nTPM: 0.6
2521 Female, age 94, right hemisphere 3.2
1794 Male, age 80, right hemisphere 0.0
1841 Female, age 85, right hemisphere 0.0
1847 Female, age 91, left hemisphere 0.0
2848 Male, age 76, right hemisphere 0.0
Subiculum
nTPM: 10.3
2729 Female, age 91, right hemisphere 21.6
2619 Male, age 74, both hemispheres 14.1
2438 Female, age 94, left hemisphere 11.4
1901 Male, age 80, both hemispheres 6.1
2042 Male, age 76, both hemispheres 4.8
1977 Female, age 85, both hemispheres 3.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.7
Samples: 197

Max nTPM: 53.6
Min nTPM: 3.0
Std nTPM: 8.0
Median nTPM: 15.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 53.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 52.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 43.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 43.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 37.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 36.6
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 33.3
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 32.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 30.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 30.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 29.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.6
FF:10169-103B7 60 years, female 57.5
FF:10153-102I9 76 years, female 47.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.3
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.1
Sample A Female 4.8
Sample B Female 3.1
Sample C Male 4.8
Sample D Male 4.6
Entorhinal cortex
nTPM: 12.0
Samples: 4

Max nTPM: 27.0
Min nTPM: 2.3
Sample A Female 27.0
Sample B Female 9.6
Sample C Male 9.1
Sample D Male 2.3
Subiculum
nTPM: 15.0
Samples: 4

Max nTPM: 32.0
Min nTPM: 1.2
Sample A Female 11.9
Sample B Female 1.2
Sample C Male 14.9
Sample D Male 32.0
Ventral hippocampus
nTPM: 7.8
Samples: 4

Max nTPM: 14.2
Min nTPM: 3.5
Sample A Female 9.8
Sample B Female 3.5
Sample C Male 14.2
Sample D Male 3.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.0
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.4
Sample A Male 4.6
Sample B Male 4.6
Sample C Female 6.2
Sample D Female 4.4
Hippocampal formation
nTPM: 5.9
Samples: 4

Max nTPM: 9.1
Min nTPM: 4.6
Sample A Male 4.6
Sample B Male 5.4
Sample C Female 4.6
Sample D Female 9.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.9
79677351 Antisense, RP_071204_02_A06, Mouse strain C57BL/6J (56 days, male) 1.0
72103843 Antisense, RP_051017_03_A02, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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