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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:50.7 nTPM
HPA:50.7 nTPM
GTEx:23.1 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:59.7 nTPM
Mouse:136.1 nTPM
Allen mouse:2.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA004098
Glial cells Low
Neuronal cells High



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.8
1781 Male, age 74, unknown 34.9
2288 Male, age 75, left hemisphere 12.2
2289 Male, age 61, right hemisphere 9.8
1854 Male, age 80, left hemisphere 9.6
1857 Female, age 85, left hemisphere 9.2
2481 Female, age 94, left hemisphere 9.1
2290 Female, age 72, unknown 8.7
2846 Female, age 79, unknown 8.6
Claustrum
nTPM: 2.3
2292 Female, age 85, both hemispheres 10.0
2196 Female, age 79, unknown 7.4
2568 Male, age 61, both hemispheres 2.0
2284 Female, age 91, both hemispheres 0.8
2645 Female, age 72, unknown 0.3
1956 Male, age 74, unknown 0.0
2198 Male, age 80, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
2491 Male, age 75, both hemispheres 0.0
Globus pallidus, externus
nTPM: 19.8
2567 Female, age 72, unknown 30.1
1996 Male, age 80, right hemisphere 24.9
2646 Male, age 61, right hemisphere 23.7
2772 Female, age 79, unknown 11.7
2395 Male, age 75, both hemispheres 8.7
Globus pallidus, internus
nTPM: 22.3
2566 Female, age 72, unknown 35.7
2778 Female, age 91, both hemispheres 21.6
2287 Male, age 75, right hemisphere 21.2
2037 Male, age 80, right hemisphere 20.8
1818 Male, age 74, unknown 19.4
2483 Female, age 94, right hemisphere 19.4
2111 Female, age 85, right hemisphere 18.0
Nucleus accumbens
nTPM: 18.7
2698 Female, age 72, unknown 27.0
2732 Male, age 80, right hemisphere 26.9
1783 Male, age 74, unknown 25.8
2824 Male, age 61, right hemisphere 15.7
1856 Female, age 91, right hemisphere 15.5
1806 Female, age 85, left hemisphere 14.1
2391 Female, age 94, left hemisphere 13.1
2286 Male, age 75, left hemisphere 11.6
Nucleus basalis of Meynert
nTPM: 15.9
2569 Male, age 61, both hemispheres 25.1
2821 Male, age 75, both hemispheres 19.8
2393 Male, age 80, right hemisphere 10.0
2484 Female, age 94, left hemisphere 8.7
Nucleus of the diagonal band
nTPM: 41.8
1979 Male, age 74, unknown 135.0
1812 Female, age 91, both hemispheres 34.8
2195 Female, age 85, both hemispheres 17.0
2775 Male, age 80, right hemisphere 11.3
2029 Male, age 61, right hemisphere 11.1
Olfactory tubercle
nTPM: 12.1
2487 Female, age 94, left hemisphere 20.5
2856 Male, age 75, right hemisphere 20.5
1998 Female, age 91, both hemispheres 4.9
1846 Male, age 80, right hemisphere 2.7
Putamen
nTPM: 11.8
1937 Female, age 91, right hemisphere 15.6
2489 Female, age 72, unknown 15.5
2482 Female, age 94, left hemisphere 14.0
1838 Male, age 80, right hemisphere 13.7
2647 Male, age 75, left hemisphere 10.3
1829 Male, age 74, unknown 9.2
2466 Female, age 79, unknown 4.5
Septal nuclei
nTPM: 50.7
2199 Male, age 80, right hemisphere 122.3
2394 Male, age 61, left hemisphere 83.4
2009 Female, age 91, both hemispheres 45.1
2629 Female, age 94, right hemisphere 42.9
2059 Female, age 85, both hemispheres 38.2
1960 Male, age 74, unknown 13.1
2031 Female, age 72, unknown 10.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.0
Samples: 246

Max nTPM: 91.1
Min nTPM: 2.7
Std nTPM: 10.1
Median nTPM: 14.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 91.1
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 78.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 59.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 53.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 52.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 40.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 37.9
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 37.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 35.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 34.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 33.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.1
Samples: 246

Max nTPM: 161.9
Min nTPM: 5.4
Std nTPM: 17.9
Median nTPM: 18.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 161.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 136.3
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 112.2
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 98.4
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 89.8
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 74.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 63.5
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 59.3
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 54.9
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 52.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 51.5
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Brain - Putamen (basal ganglia)
Average nTPM: 21.2
Samples: 205

Max nTPM: 171.8
Min nTPM: 4.4
Std nTPM: 14.3
Median nTPM: 19.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 171.8
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 74.0
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 66.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 59.6
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 59.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 56.6
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 55.0
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 40.8
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 36.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 35.8
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 35.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.5
FF:10164-103B2 76 years, female 39.5
Globus pallidus
Scaled Tags Per Million: 54.4
FF:10175-103C4 60 years, female 63.9
FF:10161-103A8 76 years, female 44.9
Nucleus accumbens
Scaled Tags Per Million: 29.8
FF:10037-101F1 23-56 years, mixed 29.8
Putamen
Scaled Tags Per Million: 59.4
FF:10176-103C5 60 years, female 59.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 59.7
Pig sample Sample description nTPM
Caudate
nTPM: 4.6
Samples: 4

Max nTPM: 5.5
Min nTPM: 4.0
Sample A Female 5.5
Sample B Female 4.4
Sample C Male 4.3
Sample D Male 4.0
Putamen
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.0
Sample A Female 6.2
Sample B Female 4.0
Sample C Male 5.4
Sample D Male 6.2
Septum
nTPM: 59.7
Samples: 4

Max nTPM: 151.8
Min nTPM: 12.2
Sample A Female 12.2
Sample B Female 21.9
Sample C Male 52.7
Sample D Male 151.8
Ventral pallidum
nTPM: 11.4
Samples: 4

Max nTPM: 17.6
Min nTPM: 7.9
Sample A Female 9.0
Sample B Female 11.2
Sample C Male 17.6
Sample D Male 7.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 136.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.6
Sample A Male 7.4
Sample B Male 7.1
Sample C Female 7.5
Sample D Female 6.6
Septum
nTPM: 136.1
Samples: 4

Max nTPM: 191.5
Min nTPM: 71.7
Sample A Male 71.7
Sample B Male 191.5
Sample C Female 139.0
Sample D Female 142.3
Ventral forebrain
nTPM: 12.6
Samples: 4

Max nTPM: 14.9
Min nTPM: 9.8
Sample A Male 9.8
Sample B Male 14.9
Sample C Female 12.8
Sample D Female 13.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.9
79677351 Antisense, RP_071204_02_A06, Mouse strain C57BL/6J (56 days, male) 2.0
72103843 Antisense, RP_051017_03_A02, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 2.1
79677351 Antisense, RP_071204_02_A06, Mouse strain C57BL/6J (56 days, male) 2.3
72103843 Antisense, RP_051017_03_A02, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.