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CMIP
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.8 nTPM
HPA:34.8 nTPM
GTEx:20.5 nTPM
FANTOM5:86.6 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:63.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.2
2586 Male, age 75, left hemisphere 34.2
2666 Male, age 74, left hemisphere 26.4
2219 Male, age 76, both hemispheres 22.1
1870 Female, age 42, unknown 21.9
1833 Male, age 53, unknown 21.2
1827 Male, age 72, unknown 21.0
2411 Female, age 72, unknown 20.1
1830 Male, age 51, unknown 17.4
2828 Female, age 72, unknown 16.9
2019 Male, age 18, unknown 10.7
Dorsal raphe nucleus
nTPM: 25.5
2047 Male, age 72, unknown 35.7
2298 Female, age 72, unknown 26.5
1828 Male, age 53, unknown 25.1
2750 Male, age 76, both hemispheres 23.8
2016 Female, age 72, unknown 16.2
Inferior colliculus
nTPM: 18.0
2849 Male, age 72, unknown 23.6
1848 Female, age 42, unknown 19.9
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 13.1
Median raphe nucleus
nTPM: 34.8
2220 Male, age 76, midline 34.8
Pedunculopontine tegmental nucleus
nTPM: 21.9
2334 Male, age 80, both hemispheres 26.6
1921 Female, age 85, both hemispheres 21.4
2338 Male, age 61, both hemispheres 17.8
Periaquaductal grey, anterior
nTPM: 27.4
1947 Male, age 18, unknown 34.0
1795 Male, age 51, unknown 27.0
2502 Female, age 75, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 19.8
1840 Male, age 53, unknown 27.9
2850 Male, age 76, both hemispheres 19.2
2464 Female, age 72, unknown 17.4
1831 Male, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 22.4
2140 Male, age 76, both hemispheres 20.0
2053 Male, age 18, unknown 18.5
Pretectal area
nTPM: 18.1
2825 Male, age 18, unknown 27.2
2224 Female, age 72, unknown 26.3
1816 Male, age 51, unknown 18.3
2007 Male, age 72, unknown 17.1
2407 Male, age 75, both hemispheres 17.0
1944 Female, age 72, unknown 16.7
2667 Female, age 75, unknown 16.4
1815 Male, age 53, unknown 15.4
2316 Male, age 76, right hemisphere 15.3
1817 Female, age 42, unknown 14.9
2273 Male, age 74, both hemispheres 14.3
Red nucleus
nTPM: 17.2
1954 Female, age 42, unknown 23.8
2584 Male, age 75, left hemisphere 19.6
2725 Female, age 75, unknown 19.3
2769 Male, age 72, unknown 18.9
2823 Male, age 76, right hemisphere 18.9
2227 Male, age 72, unknown 17.6
1904 Male, age 53, unknown 17.5
2588 Male, age 74, left hemisphere 15.9
1821 Female, age 72, unknown 15.6
2503 Female, age 72, unknown 14.2
1865 Male, age 51, unknown 12.9
2785 Male, age 18, unknown 11.6
Substantia nigra
nTPM: 25.6
1916 Female, age 42, unknown 39.3
1851 Male, age 51, unknown 31.3
2665 Male, age 74, both hemispheres 30.7
2699 Male, age 18, unknown 26.6
2241 Male, age 72, unknown 26.5
2590 Female, age 75, unknown 23.6
2409 Female, age 72, unknown 20.6
1941 Male, age 53, unknown 19.8
1889 Female, age 72, unknown 19.3
2583 Male, age 75, right hemisphere 18.5
Superior colliculus
nTPM: 17.8
1796 Male, age 53, unknown 24.1
2668 Female, age 75, unknown 23.1
1839 Male, age 51, unknown 22.3
2261 Male, age 18, unknown 21.7
1895 Male, age 76, right hemisphere 18.5
2664 Male, age 75, both hemispheres 17.4
2587 Male, age 74, left hemisphere 16.0
2087 Female, age 72, unknown 15.6
1913 Female, age 42, unknown 11.0
1995 Male, age 72, unknown 7.8
Ventral tegmental area
nTPM: 27.9
2218 Male, age 76, both hemispheres 31.0
1915 Female, age 42, unknown 30.0
2410 Female, age 72, unknown 28.3
2223 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 25.3
1942 Male, age 51, unknown 25.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 44.9
Min nTPM: 8.5
Std nTPM: 8.1
Median nTPM: 19.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 44.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 43.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 42.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 40.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 39.0
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 38.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 38.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 38.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 37.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 36.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 35.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 86.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 86.6
FF:10158-103A5 76 years, female 86.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 62.4
Min nTPM: 32.6
Sample A Female 32.6
Sample B Female 42.7
Sample C Male 60.7
Sample D Male 62.4
Periaqueductal gray
nTPM: 45.4
Samples: 3

Max nTPM: 58.5
Min nTPM: 38.5
Sample B Female 38.5
Sample C Male 58.5
Sample D Male 39.3
Substantia nigra
nTPM: 52.0
Samples: 4

Max nTPM: 70.5
Min nTPM: 29.4
Sample A Female 69.4
Sample B Female 38.6
Sample C Male 70.5
Sample D Male 29.4
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 56.6
Min nTPM: 25.8
Sample A Female 56.6
Sample B Female 25.8
Sample C Male 48.0
Sample D Male 51.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.6
Samples: 4

Max nTPM: 69.1
Min nTPM: 58.4
Sample A Male 61.5
Sample B Male 58.4
Sample C Female 65.4
Sample D Female 69.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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