ABOUTMENU
HELP
NEWS
PID1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA:30.5 nTPM
GTEx:25.3 nTPM
FANTOM5:16.1 Scaled Tags Per Million
Pig:20.2 nTPM
Mouse:33.9 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.6
2219 Male, age 76, both hemispheres 21.9
2586 Male, age 75, left hemisphere 20.3
2666 Male, age 74, left hemisphere 16.9
1833 Male, age 53, unknown 14.0
2828 Female, age 72, unknown 13.9
2411 Female, age 72, unknown 12.7
2019 Male, age 18, unknown 11.7
1870 Female, age 42, unknown 11.6
1827 Male, age 72, unknown 11.4
1830 Male, age 51, unknown 11.4
Dorsal raphe nucleus
nTPM: 13.7
2016 Female, age 72, unknown 14.9
1828 Male, age 53, unknown 14.2
2047 Male, age 72, unknown 13.6
2298 Female, age 72, unknown 13.6
2750 Male, age 76, both hemispheres 12.0
Inferior colliculus
nTPM: 14.0
1890 Male, age 53, unknown 15.7
2849 Male, age 72, unknown 14.4
1848 Female, age 42, unknown 13.0
2097 Female, age 72, unknown 12.8
Median raphe nucleus
nTPM: 13.5
2220 Male, age 76, midline 13.5
Pedunculopontine tegmental nucleus
nTPM: 10.9
1921 Female, age 85, both hemispheres 12.0
2334 Male, age 80, both hemispheres 11.8
2338 Male, age 61, both hemispheres 8.9
Periaquaductal grey, anterior
nTPM: 13.2
1947 Male, age 18, unknown 14.2
2502 Female, age 75, unknown 13.8
1795 Male, age 51, unknown 11.8
Periaquaductal grey, dorsal
nTPM: 14.1
1840 Male, age 53, unknown 17.9
2464 Female, age 72, unknown 13.5
2850 Male, age 76, both hemispheres 12.8
1831 Male, age 72, unknown 12.4
Periaquaductal grey, lateral
nTPM: 11.6
2140 Male, age 76, both hemispheres 13.4
2053 Male, age 18, unknown 11.7
2272 Male, age 74, both hemispheres 9.8
Pretectal area
nTPM: 14.7
1944 Female, age 72, unknown 18.6
1817 Female, age 42, unknown 18.5
1816 Male, age 51, unknown 17.6
2224 Female, age 72, unknown 16.9
2007 Male, age 72, unknown 15.8
1815 Male, age 53, unknown 15.4
2667 Female, age 75, unknown 15.0
2825 Male, age 18, unknown 14.3
2407 Male, age 75, both hemispheres 11.3
2316 Male, age 76, right hemisphere 9.9
2273 Male, age 74, both hemispheres 8.1
Red nucleus
nTPM: 14.1
1821 Female, age 72, unknown 17.7
2588 Male, age 74, left hemisphere 17.6
2227 Male, age 72, unknown 14.9
2769 Male, age 72, unknown 14.8
2503 Female, age 72, unknown 14.4
2725 Female, age 75, unknown 14.3
1904 Male, age 53, unknown 13.5
1865 Male, age 51, unknown 13.3
2823 Male, age 76, right hemisphere 13.3
1954 Female, age 42, unknown 12.8
2584 Male, age 75, left hemisphere 11.7
2785 Male, age 18, unknown 11.2
Substantia nigra
nTPM: 30.5
1916 Female, age 42, unknown 48.8
2699 Male, age 18, unknown 39.2
2241 Male, age 72, unknown 39.0
1851 Male, age 51, unknown 35.6
2665 Male, age 74, both hemispheres 33.2
2409 Female, age 72, unknown 29.7
1941 Male, age 53, unknown 22.9
1889 Female, age 72, unknown 20.5
2583 Male, age 75, right hemisphere 19.2
2590 Female, age 75, unknown 17.1
Superior colliculus
nTPM: 13.1
2668 Female, age 75, unknown 19.7
2087 Female, age 72, unknown 18.1
1796 Male, age 53, unknown 13.7
2664 Male, age 75, both hemispheres 13.1
2261 Male, age 18, unknown 12.8
1839 Male, age 51, unknown 12.3
1895 Male, age 76, right hemisphere 12.2
1995 Male, age 72, unknown 10.1
2587 Male, age 74, left hemisphere 10.1
1913 Female, age 42, unknown 8.7
Ventral tegmental area
nTPM: 23.3
2410 Female, age 72, unknown 30.3
1915 Female, age 42, unknown 30.1
2218 Male, age 76, both hemispheres 28.7
1942 Male, age 51, unknown 21.9
2021 Male, age 53, unknown 17.3
2223 Female, age 72, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.3
Samples: 139

Max nTPM: 74.0
Min nTPM: 4.8
Std nTPM: 12.1
Median nTPM: 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 74.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 54.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 53.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 53.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 51.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 47.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 46.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 45.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 44.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.1
FF:10158-103A5 76 years, female 16.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.2
Pig sample Sample description nTPM
Midbrain
nTPM: 11.6
Samples: 4

Max nTPM: 14.6
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 14.6
Sample C Male 10.4
Sample D Male 11.3
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 11.7
Min nTPM: 10.1
Sample B Female 10.8
Sample C Male 11.7
Sample D Male 10.1
Substantia nigra
nTPM: 20.3
Samples: 4

Max nTPM: 27.3
Min nTPM: 10.5
Sample A Female 24.2
Sample B Female 19.0
Sample C Male 27.3
Sample D Male 10.5
Superior colliculi
nTPM: 12.5
Samples: 4

Max nTPM: 15.8
Min nTPM: 6.9
Sample A Female 14.6
Sample B Female 15.8
Sample C Male 6.9
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 33.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 35.1
Min nTPM: 33.1
Sample A Male 33.1
Sample B Male 34.1
Sample C Female 35.1
Sample D Female 33.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
73635974 Antisense, RP_051101_03_C07, Mouse strain C57BL/6J (56 days, male) 0.6
70230915 Antisense, RP_050524_04_G09, Mouse strain C57BL/6J (56 days, male) 0.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.