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SLC25A28
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.8 nTPM
HPA:112.8 nTPM
GTEx:84.7 nTPM
FANTOM5:23.1 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:9.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 112.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 106.8
2586 Male, age 75, left hemisphere 109.4
1833 Male, age 53, unknown 109.0
2666 Male, age 74, left hemisphere 107.7
1830 Male, age 51, unknown 107.4
2411 Female, age 72, unknown 107.1
2828 Female, age 72, unknown 107.0
1870 Female, age 42, unknown 106.0
1827 Male, age 72, unknown 105.8
2019 Male, age 18, unknown 104.4
2219 Male, age 76, both hemispheres 104.1
Dorsal raphe nucleus
nTPM: 105.4
1828 Male, age 53, unknown 108.6
2750 Male, age 76, both hemispheres 106.4
2047 Male, age 72, unknown 105.4
2016 Female, age 72, unknown 104.0
2298 Female, age 72, unknown 102.7
Inferior colliculus
nTPM: 104.9
2849 Male, age 72, unknown 107.6
1848 Female, age 42, unknown 105.1
1890 Male, age 53, unknown 104.4
2097 Female, age 72, unknown 102.5
Median raphe nucleus
nTPM: 107.6
2220 Male, age 76, midline 107.6
Pedunculopontine tegmental nucleus
nTPM: 105.8
2338 Male, age 61, both hemispheres 106.2
1921 Female, age 85, both hemispheres 105.5
2334 Male, age 80, both hemispheres 105.5
Periaquaductal grey, anterior
nTPM: 104.6
1947 Male, age 18, unknown 105.5
2502 Female, age 75, unknown 104.7
1795 Male, age 51, unknown 103.6
Periaquaductal grey, dorsal
nTPM: 104.6
2850 Male, age 76, both hemispheres 107.1
1840 Male, age 53, unknown 106.2
2464 Female, age 72, unknown 103.2
1831 Male, age 72, unknown 102.0
Periaquaductal grey, lateral
nTPM: 104.7
2140 Male, age 76, both hemispheres 106.4
2053 Male, age 18, unknown 105.1
2272 Male, age 74, both hemispheres 102.7
Pretectal area
nTPM: 104.3
2407 Male, age 75, both hemispheres 107.7
2825 Male, age 18, unknown 106.3
1815 Male, age 53, unknown 105.3
2316 Male, age 76, right hemisphere 105.2
1817 Female, age 42, unknown 104.5
2667 Female, age 75, unknown 104.3
1944 Female, age 72, unknown 103.6
1816 Male, age 51, unknown 103.5
2007 Male, age 72, unknown 102.4
2273 Male, age 74, both hemispheres 102.4
2224 Female, age 72, unknown 102.3
Red nucleus
nTPM: 107.4
2725 Female, age 75, unknown 110.0
1821 Female, age 72, unknown 109.6
2503 Female, age 72, unknown 107.9
2588 Male, age 74, left hemisphere 107.9
2769 Male, age 72, unknown 107.9
2227 Male, age 72, unknown 107.1
2584 Male, age 75, left hemisphere 107.1
2823 Male, age 76, right hemisphere 107.0
1904 Male, age 53, unknown 106.6
1954 Female, age 42, unknown 106.6
1865 Male, age 51, unknown 106.5
2785 Male, age 18, unknown 104.9
Substantia nigra
nTPM: 112.8
1916 Female, age 42, unknown 119.9
1851 Male, age 51, unknown 117.5
2241 Male, age 72, unknown 117.2
2699 Male, age 18, unknown 116.3
2409 Female, age 72, unknown 114.6
2665 Male, age 74, both hemispheres 112.0
2590 Female, age 75, unknown 108.7
2583 Male, age 75, right hemisphere 108.5
1889 Female, age 72, unknown 107.5
1941 Male, age 53, unknown 105.5
Superior colliculus
nTPM: 104.7
1796 Male, age 53, unknown 107.1
2664 Male, age 75, both hemispheres 105.7
1895 Male, age 76, right hemisphere 105.5
2668 Female, age 75, unknown 105.2
1839 Male, age 51, unknown 104.8
2587 Male, age 74, left hemisphere 104.5
1995 Male, age 72, unknown 104.3
2087 Female, age 72, unknown 104.0
2261 Male, age 18, unknown 103.3
1913 Female, age 42, unknown 103.1
Ventral tegmental area
nTPM: 109.6
2410 Female, age 72, unknown 115.5
1915 Female, age 42, unknown 113.4
2218 Male, age 76, both hemispheres 109.4
1942 Male, age 51, unknown 107.5
2021 Male, age 53, unknown 105.9
2223 Female, age 72, unknown 105.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.7
Samples: 139

Max nTPM: 141.1
Min nTPM: 46.4
Std nTPM: 18.4
Median nTPM: 83.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 141.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 126.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 125.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 123.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 123.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 122.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 121.2
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 121.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 118.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 117.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 117.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.1
FF:10158-103A5 76 years, female 23.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Midbrain
nTPM: 26.9
Samples: 4

Max nTPM: 29.8
Min nTPM: 21.1
Sample A Female 28.1
Sample B Female 29.8
Sample C Male 21.1
Sample D Male 28.5
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 31.2
Min nTPM: 26.0
Sample B Female 26.0
Sample C Male 31.2
Sample D Male 27.4
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 33.2
Min nTPM: 27.0
Sample A Female 31.6
Sample B Female 27.0
Sample C Male 33.2
Sample D Male 27.9
Superior colliculi
nTPM: 25.6
Samples: 4

Max nTPM: 29.4
Min nTPM: 21.6
Sample A Female 29.4
Sample B Female 21.9
Sample C Male 21.6
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.7
Min nTPM: 8.6
Sample A Male 10.7
Sample B Male 8.6
Sample C Female 9.7
Sample D Female 9.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.