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PDE6D
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:44.4 nTPM
HPA:44.4 nTPM
GTEx:41.0 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:61.0 nTPM
Allen mouse:6.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037433Antibody HPA037434
Glial cells Not detectedLow
Neuronal cells Not detectedMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 44.4
Sample id Sample description nTPM
Hippocampus
nTPM: 44.0
1855 Male, age 76, left hemisphere 46.0
2529 Female, age 94, left hemisphere 44.6
1911 Female, age 85, right hemisphere 44.1
1898 Male, age 80, left hemisphere 43.8
2148 Female, age 91, left hemisphere 43.2
2621 Female, age 67, right hemisphere 42.2
Dentate gyrus
nTPM: 42.8
2530 Female, age 94, left hemisphere 44.7
2010 Male, age 76, both hemispheres 44.5
2246 Female, age 85, both hemispheres 44.4
1927 Female, age 91, both hemispheres 42.4
2528 Male, age 74, both hemispheres 41.7
2531 Female, age 67, both hemispheres 39.0
Entorhinal gyrus
nTPM: 43.1
2613 Female, age 94, left hemisphere 44.5
1787 Male, age 76, left hemisphere 43.5
2117 Female, age 91, right hemisphere 43.5
1938 Female, age 85, left hemisphere 43.3
2764 Male, age 80, right hemisphere 42.0
2686 Male, age 75, right hemisphere 41.6
Hippocampus, CA1
nTPM: 44.4
2749 Male, age 80, left hemisphere 47.2
1873 Female, age 85, both hemispheres 44.5
2045 Male, age 76, both hemispheres 44.0
2527 Male, age 74, both hemispheres 43.3
2082 Female, age 91, right hemisphere 42.8
Hippocampus, CA2
nTPM: 42.8
1892 Male, age 76, both hemispheres 45.1
2437 Female, age 94, left hemisphere 42.8
2249 Male, age 74, both hemispheres 42.7
2113 Female, age 91, right hemisphere 42.5
1963 Male, age 80, left hemisphere 42.4
1940 Female, age 85, left hemisphere 41.3
Hippocampus, CA3
nTPM: 43.2
1867 Male, age 76, both hemispheres 45.4
2137 Male, age 80, left hemisphere 44.5
1891 Female, age 85, both hemispheres 44.3
2620 Female, age 94, left hemisphere 42.1
2861 Female, age 67, both hemispheres 41.7
2436 Male, age 74, both hemispheres 41.2
Parahippocampal cortex
nTPM: 42.6
2692 Male, age 74, both hemispheres 46.6
1933 Female, age 85, both hemispheres 42.8
2693 Female, age 94, both hemispheres 42.8
1990 Female, age 91, right hemisphere 42.6
2250 Female, age 67, right hemisphere 42.4
2532 Female, age 72, left hemisphere 42.4
2018 Male, age 76, both hemispheres 42.3
1850 Male, age 80, both hemispheres 42.2
2622 Female, age 67, right hemisphere 41.2
2245 Female, age 91, both hemispheres 41.0
Perirhinal gyrus
nTPM: 42.1
2848 Male, age 76, right hemisphere 42.9
1841 Female, age 85, right hemisphere 42.3
1847 Female, age 91, left hemisphere 42.1
1794 Male, age 80, right hemisphere 41.5
2521 Female, age 94, right hemisphere 41.5
Subiculum
nTPM: 43.6
2619 Male, age 74, both hemispheres 44.4
2042 Male, age 76, both hemispheres 44.0
1901 Male, age 80, both hemispheres 43.9
1977 Female, age 85, both hemispheres 43.8
2729 Female, age 91, right hemisphere 43.6
2438 Female, age 94, left hemisphere 41.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 41.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.0
Samples: 197

Max nTPM: 66.0
Min nTPM: 25.8
Std nTPM: 6.9
Median nTPM: 40.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 66.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 63.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 61.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 57.5
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 57.4
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 56.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 55.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 55.0
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 55.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 54.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 53.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 11.0
FF:10153-102I9 76 years, female 14.7
FF:10169-103B7 60 years, female 7.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 36.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 36.8
Samples: 4

Max nTPM: 48.6
Min nTPM: 26.1
Sample A Female 48.6
Sample B Female 34.2
Sample C Male 38.3
Sample D Male 26.1
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 33.6
Min nTPM: 26.7
Sample A Female 33.6
Sample B Female 31.0
Sample C Male 28.2
Sample D Male 26.7
Subiculum
nTPM: 31.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 25.8
Sample A Female 41.4
Sample B Female 29.5
Sample C Male 28.2
Sample D Male 25.8
Ventral hippocampus
nTPM: 32.9
Samples: 4

Max nTPM: 37.0
Min nTPM: 25.1
Sample A Female 33.8
Sample B Female 25.1
Sample C Male 37.0
Sample D Male 35.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 58.0
Samples: 4

Max nTPM: 60.5
Min nTPM: 55.2
Sample A Male 59.4
Sample B Male 56.7
Sample C Female 60.5
Sample D Female 55.2
Hippocampal formation
nTPM: 61.1
Samples: 4

Max nTPM: 64.7
Min nTPM: 55.9
Sample A Male 64.7
Sample B Male 55.9
Sample C Female 62.1
Sample D Female 61.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.8
69059804 Antisense, RP_050317_04_A09, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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