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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:48.1 nTPM
HPA:48.1 nTPM
GTEx:30.6 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:109.3 nTPM
Mouse:114.1 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.0
2219 Male, age 76, both hemispheres 37.6
1827 Male, age 72, unknown 20.9
2411 Female, age 72, unknown 18.8
1870 Female, age 42, unknown 15.3
1833 Male, age 53, unknown 13.5
1830 Male, age 51, unknown 12.7
2586 Male, age 75, left hemisphere 8.6
2666 Male, age 74, left hemisphere 8.0
2828 Female, age 72, unknown 2.8
2019 Male, age 18, unknown 1.6
Dorsal raphe nucleus
nTPM: 48.1
2047 Male, age 72, unknown 133.3
2298 Female, age 72, unknown 48.4
2750 Male, age 76, both hemispheres 37.2
2016 Female, age 72, unknown 12.6
1828 Male, age 53, unknown 8.8
Inferior colliculus
nTPM: 9.5
2849 Male, age 72, unknown 17.5
1848 Female, age 42, unknown 7.2
1890 Male, age 53, unknown 6.9
2097 Female, age 72, unknown 6.5
Median raphe nucleus
nTPM: 45.7
2220 Male, age 76, midline 45.7
Pedunculopontine tegmental nucleus
nTPM: 13.3
2334 Male, age 80, both hemispheres 22.7
2338 Male, age 61, both hemispheres 9.7
1921 Female, age 85, both hemispheres 7.6
Periaquaductal grey, anterior
nTPM: 6.5
2502 Female, age 75, unknown 10.3
1947 Male, age 18, unknown 4.7
1795 Male, age 51, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 27.6
2464 Female, age 72, unknown 39.0
1840 Male, age 53, unknown 34.6
2850 Male, age 76, both hemispheres 32.1
1831 Male, age 72, unknown 4.7
Periaquaductal grey, lateral
nTPM: 15.4
2140 Male, age 76, both hemispheres 21.4
2053 Male, age 18, unknown 15.3
2272 Male, age 74, both hemispheres 9.4
Pretectal area
nTPM: 16.6
2825 Male, age 18, unknown 77.7
2224 Female, age 72, unknown 66.7
2667 Female, age 75, unknown 11.5
2273 Male, age 74, both hemispheres 6.5
1816 Male, age 51, unknown 6.3
2407 Male, age 75, both hemispheres 4.7
2316 Male, age 76, right hemisphere 3.0
1815 Male, age 53, unknown 2.6
1944 Female, age 72, unknown 1.8
2007 Male, age 72, unknown 1.3
1817 Female, age 42, unknown 0.8
Red nucleus
nTPM: 14.6
2584 Male, age 75, left hemisphere 54.4
1954 Female, age 42, unknown 36.2
2823 Male, age 76, right hemisphere 19.5
1904 Male, age 53, unknown 13.4
2227 Male, age 72, unknown 11.0
2769 Male, age 72, unknown 10.4
1821 Female, age 72, unknown 6.4
2588 Male, age 74, left hemisphere 6.4
1865 Male, age 51, unknown 5.5
2725 Female, age 75, unknown 5.1
2503 Female, age 72, unknown 5.0
2785 Male, age 18, unknown 1.7
Substantia nigra
nTPM: 5.3
2241 Male, age 72, unknown 8.6
1889 Female, age 72, unknown 8.2
1851 Male, age 51, unknown 8.1
2699 Male, age 18, unknown 7.4
2583 Male, age 75, right hemisphere 4.8
2590 Female, age 75, unknown 4.4
2665 Male, age 74, both hemispheres 4.4
1941 Male, age 53, unknown 3.3
1916 Female, age 42, unknown 2.6
2409 Female, age 72, unknown 1.1
Superior colliculus
nTPM: 7.9
1796 Male, age 53, unknown 15.1
1839 Male, age 51, unknown 12.8
2261 Male, age 18, unknown 11.8
2587 Male, age 74, left hemisphere 9.7
1913 Female, age 42, unknown 8.4
2664 Male, age 75, both hemispheres 7.0
2087 Female, age 72, unknown 4.2
2668 Female, age 75, unknown 4.1
1895 Male, age 76, right hemisphere 3.4
1995 Male, age 72, unknown 2.9
Ventral tegmental area
nTPM: 38.8
2218 Male, age 76, both hemispheres 74.3
2021 Male, age 53, unknown 64.5
2223 Female, age 72, unknown 40.2
1915 Female, age 42, unknown 25.5
1942 Male, age 51, unknown 17.9
2410 Female, age 72, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.6
Samples: 139

Max nTPM: 371.1
Min nTPM: 0.0
Std nTPM: 55.0
Median nTPM: 9.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 371.1
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 333.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 229.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 202.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 168.9
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 156.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 152.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 114.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 111.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 87.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.3
Pig sample Sample description nTPM
Midbrain
nTPM: 65.2
Samples: 4

Max nTPM: 221.4
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 26.8
Sample C Male 6.4
Sample D Male 221.4
Periaqueductal gray
nTPM: 104.2
Samples: 3

Max nTPM: 155.3
Min nTPM: 64.4
Sample B Female 64.4
Sample C Male 155.3
Sample D Male 92.9
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 26.2
Min nTPM: 7.5
Sample A Female 26.2
Sample B Female 16.5
Sample C Male 21.2
Sample D Male 7.5
Superior colliculi
nTPM: 109.3
Samples: 4

Max nTPM: 248.7
Min nTPM: 9.1
Sample A Female 248.7
Sample B Female 9.1
Sample C Male 21.4
Sample D Male 157.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 114.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 114.0
Samples: 4

Max nTPM: 129.6
Min nTPM: 94.0
Sample A Male 129.6
Sample B Male 114.2
Sample C Female 94.0
Sample D Female 118.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
1001 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 3.0
1002 Antisense, RP_Baylor_103041, Mouse strain C57BL/6J (56 days, male) 2.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.