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SSBP3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.9 nTPM
HPA:45.9 nTPM
GTEx:9.2 nTPM
FANTOM5:47.5 Scaled Tags Per Million
Pig:42.1 nTPM
Mouse:63.2 nTPM
Allen mouse:1.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 45.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.3
1781 Male, age 74, unknown 29.1
2288 Male, age 75, left hemisphere 24.2
2846 Female, age 79, unknown 23.9
2290 Female, age 72, unknown 20.6
1857 Female, age 85, left hemisphere 19.2
1854 Male, age 80, left hemisphere 17.4
2289 Male, age 61, right hemisphere 10.8
2481 Female, age 94, left hemisphere 9.3
Claustrum
nTPM: 29.5
2198 Male, age 80, both hemispheres 34.2
1956 Male, age 74, unknown 33.3
2196 Female, age 79, unknown 31.9
2284 Female, age 91, both hemispheres 31.9
2491 Male, age 75, both hemispheres 31.9
2645 Female, age 72, unknown 30.1
2568 Male, age 61, both hemispheres 29.7
2392 Female, age 94, both hemispheres 26.0
2292 Female, age 85, both hemispheres 16.2
Globus pallidus, externus
nTPM: 6.1
2772 Female, age 79, unknown 8.4
2646 Male, age 61, right hemisphere 8.3
2395 Male, age 75, both hemispheres 8.1
1996 Male, age 80, right hemisphere 3.9
2567 Female, age 72, unknown 1.9
Globus pallidus, internus
nTPM: 8.7
2287 Male, age 75, right hemisphere 19.0
2778 Female, age 91, both hemispheres 9.4
2483 Female, age 94, right hemisphere 9.1
2037 Male, age 80, right hemisphere 7.6
1818 Male, age 74, unknown 7.1
2566 Female, age 72, unknown 4.9
2111 Female, age 85, right hemisphere 4.0
Nucleus accumbens
nTPM: 20.6
1856 Female, age 91, right hemisphere 30.9
1783 Male, age 74, unknown 26.9
2698 Female, age 72, unknown 24.9
1806 Female, age 85, left hemisphere 21.8
2286 Male, age 75, left hemisphere 20.4
2824 Male, age 61, right hemisphere 18.5
2732 Male, age 80, right hemisphere 11.7
2391 Female, age 94, left hemisphere 9.6
Nucleus basalis of Meynert
nTPM: 16.9
2821 Male, age 75, both hemispheres 25.3
2393 Male, age 80, right hemisphere 18.6
2484 Female, age 94, left hemisphere 13.2
2569 Male, age 61, both hemispheres 10.5
Nucleus of the diagonal band
nTPM: 45.9
2775 Male, age 80, right hemisphere 63.2
2195 Female, age 85, both hemispheres 62.4
1812 Female, age 91, both hemispheres 44.1
2029 Male, age 61, right hemisphere 41.5
1979 Male, age 74, unknown 18.4
Olfactory tubercle
nTPM: 44.3
1998 Female, age 91, both hemispheres 47.0
1846 Male, age 80, right hemisphere 45.9
2487 Female, age 94, left hemisphere 44.9
2856 Male, age 75, right hemisphere 39.4
Putamen
nTPM: 15.8
1838 Male, age 80, right hemisphere 22.6
1937 Female, age 91, right hemisphere 18.3
2466 Female, age 79, unknown 16.8
2647 Male, age 75, left hemisphere 16.5
1829 Male, age 74, unknown 15.5
2482 Female, age 94, left hemisphere 12.1
2489 Female, age 72, unknown 8.6
Septal nuclei
nTPM: 38.7
1960 Male, age 74, unknown 67.4
2629 Female, age 94, right hemisphere 49.6
2031 Female, age 72, unknown 49.0
2059 Female, age 85, both hemispheres 41.1
2009 Female, age 91, both hemispheres 37.6
2199 Male, age 80, right hemisphere 13.8
2394 Male, age 61, left hemisphere 12.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.6
Samples: 246

Max nTPM: 36.1
Min nTPM: 0.0
Std nTPM: 5.1
Median nTPM: 5.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 36.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 28.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 24.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 20.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 18.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 18.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 18.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 18.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 18.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 17.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 16.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.2
Samples: 246

Max nTPM: 25.6
Min nTPM: 0.0
Std nTPM: 6.6
Median nTPM: 8.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 25.6
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 24.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 24.2
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 23.9
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 23.6
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 23.0
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 22.7
GTEX-S7SE-0011-R6A-SM-2XCD9 50-59 years, male 22.4
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 22.3
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 22.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 21.4
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Brain - Putamen (basal ganglia)
Average nTPM: 4.3
Samples: 205

Max nTPM: 19.7
Min nTPM: 0.0
Std nTPM: 3.5
Median nTPM: 3.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 19.7
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 15.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 15.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 14.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 13.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 13.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 12.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 12.2
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 12.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 12.0
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 11.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 36.1
FF:10164-103B2 76 years, female 36.1
Globus pallidus
Scaled Tags Per Million: 19.5
FF:10161-103A8 76 years, female 26.3
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 47.5
FF:10037-101F1 23-56 years, mixed 47.5
Putamen
Scaled Tags Per Million: 37.3
FF:10176-103C5 60 years, female 37.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 42.1
Pig sample Sample description nTPM
Caudate
nTPM: 42.1
Samples: 4

Max nTPM: 50.7
Min nTPM: 36.3
Sample A Female 36.3
Sample B Female 41.4
Sample C Male 50.7
Sample D Male 40.1
Putamen
nTPM: 38.4
Samples: 4

Max nTPM: 47.5
Min nTPM: 24.3
Sample A Female 24.3
Sample B Female 35.4
Sample C Male 47.5
Sample D Male 46.5
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 24.0
Sample A Female 29.5
Sample B Female 31.0
Sample C Male 29.4
Sample D Male 24.0
Ventral pallidum
nTPM: 31.2
Samples: 4

Max nTPM: 33.5
Min nTPM: 28.1
Sample A Female 32.1
Sample B Female 33.5
Sample C Male 28.1
Sample D Male 31.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 63.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 52.2
Samples: 4

Max nTPM: 56.7
Min nTPM: 49.5
Sample A Male 49.5
Sample B Male 51.2
Sample C Female 51.5
Sample D Female 56.7
Septum
nTPM: 63.2
Samples: 4

Max nTPM: 68.8
Min nTPM: 59.5
Sample A Male 68.8
Sample B Male 61.7
Sample C Female 62.8
Sample D Female 59.5
Ventral forebrain
nTPM: 55.2
Samples: 4

Max nTPM: 59.9
Min nTPM: 51.1
Sample A Male 51.1
Sample B Male 54.4
Sample C Female 59.9
Sample D Female 55.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.7
74635614 Antisense, RP_060215_04_B01, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 1.3
74635614 Antisense, RP_060215_04_B01, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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