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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA:43.3 nTPM
GTEx:25.5 nTPM
FANTOM5:113.3 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:49.8 nTPM
Allen mouse:2.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 32.3
1781 Male, age 74, unknown 54.6
2846 Female, age 79, unknown 40.2
2481 Female, age 94, left hemisphere 30.1
1857 Female, age 85, left hemisphere 29.9
1854 Male, age 80, left hemisphere 28.9
2288 Male, age 75, left hemisphere 26.1
2290 Female, age 72, unknown 25.6
2289 Male, age 61, right hemisphere 23.2
Claustrum
nTPM: 39.2
2645 Female, age 72, unknown 51.0
2196 Female, age 79, unknown 43.9
2292 Female, age 85, both hemispheres 41.8
1956 Male, age 74, unknown 41.4
2568 Male, age 61, both hemispheres 37.3
2392 Female, age 94, both hemispheres 36.2
2198 Male, age 80, both hemispheres 34.9
2284 Female, age 91, both hemispheres 34.2
2491 Male, age 75, both hemispheres 32.2
Globus pallidus, externus
nTPM: 32.9
2395 Male, age 75, both hemispheres 38.0
2772 Female, age 79, unknown 35.3
2646 Male, age 61, right hemisphere 32.8
1996 Male, age 80, right hemisphere 31.4
2567 Female, age 72, unknown 27.0
Globus pallidus, internus
nTPM: 32.0
2287 Male, age 75, right hemisphere 40.9
2037 Male, age 80, right hemisphere 34.4
2483 Female, age 94, right hemisphere 34.3
2778 Female, age 91, both hemispheres 33.8
2111 Female, age 85, right hemisphere 29.6
1818 Male, age 74, unknown 25.8
2566 Female, age 72, unknown 25.1
Nucleus accumbens
nTPM: 31.0
1856 Female, age 91, right hemisphere 37.6
1783 Male, age 74, unknown 36.3
2698 Female, age 72, unknown 36.1
1806 Female, age 85, left hemisphere 32.1
2732 Male, age 80, right hemisphere 30.9
2824 Male, age 61, right hemisphere 27.5
2391 Female, age 94, left hemisphere 24.3
2286 Male, age 75, left hemisphere 23.3
Nucleus basalis of Meynert
nTPM: 40.6
2484 Female, age 94, left hemisphere 49.5
2569 Male, age 61, both hemispheres 43.3
2821 Male, age 75, both hemispheres 38.0
2393 Male, age 80, right hemisphere 31.5
Nucleus of the diagonal band
nTPM: 40.6
2195 Female, age 85, both hemispheres 46.6
2029 Male, age 61, right hemisphere 42.9
2775 Male, age 80, right hemisphere 40.6
1812 Female, age 91, both hemispheres 39.2
1979 Male, age 74, unknown 33.9
Olfactory tubercle
nTPM: 40.1
2856 Male, age 75, right hemisphere 42.2
1846 Male, age 80, right hemisphere 41.2
1998 Female, age 91, both hemispheres 39.1
2487 Female, age 94, left hemisphere 37.8
Putamen
nTPM: 32.0
2647 Male, age 75, left hemisphere 37.7
2482 Female, age 94, left hemisphere 37.6
2466 Female, age 79, unknown 34.5
2489 Female, age 72, unknown 30.2
1838 Male, age 80, right hemisphere 29.7
1937 Female, age 91, right hemisphere 29.0
1829 Male, age 74, unknown 25.3
Septal nuclei
nTPM: 43.3
2031 Female, age 72, unknown 72.1
1960 Male, age 74, unknown 55.2
2059 Female, age 85, both hemispheres 41.0
2394 Male, age 61, left hemisphere 34.6
2009 Female, age 91, both hemispheres 34.4
2629 Female, age 94, right hemisphere 33.3
2199 Male, age 80, right hemisphere 32.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 25.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 21.2
Samples: 246

Max nTPM: 79.8
Min nTPM: 4.7
Std nTPM: 12.1
Median nTPM: 18.3
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 79.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 70.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 65.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 63.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 59.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 59.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 53.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 53.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 49.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 49.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 48.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 136.6
Min nTPM: 6.5
Std nTPM: 15.8
Median nTPM: 21.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 136.6
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 110.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 107.6
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 88.2
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 85.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 73.2
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 70.6
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 61.7
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 59.3
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 59.2
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 58.9
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Brain - Putamen (basal ganglia)
Average nTPM: 24.0
Samples: 205

Max nTPM: 101.7
Min nTPM: 5.2
Std nTPM: 15.5
Median nTPM: 19.7
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 101.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 99.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 85.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 75.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 74.9
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 59.3
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 58.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 58.2
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 58.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 56.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 56.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 113.0
FF:10164-103B2 76 years, female 113.0
Globus pallidus
Scaled Tags Per Million: 111.1
FF:10161-103A8 76 years, female 121.2
FF:10175-103C4 60 years, female 101.0
Nucleus accumbens
Scaled Tags Per Million: 113.3
FF:10037-101F1 23-56 years, mixed 113.3
Putamen
Scaled Tags Per Million: 90.5
FF:10176-103C5 60 years, female 90.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Caudate
nTPM: 17.1
Samples: 4

Max nTPM: 19.7
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 16.5
Sample C Male 19.7
Sample D Male 17.6
Putamen
nTPM: 13.4
Samples: 4

Max nTPM: 15.8
Min nTPM: 10.8
Sample A Female 10.8
Sample B Female 12.1
Sample C Male 15.0
Sample D Male 15.8
Septum
nTPM: 15.3
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.8
Sample A Female 18.8
Sample B Female 16.5
Sample C Male 13.2
Sample D Male 12.8
Ventral pallidum
nTPM: 15.1
Samples: 4

Max nTPM: 20.8
Min nTPM: 11.5
Sample A Female 20.8
Sample B Female 12.6
Sample C Male 11.5
Sample D Male 15.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 49.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.9
Samples: 4

Max nTPM: 40.3
Min nTPM: 37.8
Sample A Male 40.3
Sample B Male 38.0
Sample C Female 37.8
Sample D Female 39.5
Septum
nTPM: 49.8
Samples: 4

Max nTPM: 52.2
Min nTPM: 47.7
Sample A Male 52.2
Sample B Male 48.6
Sample C Female 47.7
Sample D Female 50.7
Ventral forebrain
nTPM: 49.0
Samples: 4

Max nTPM: 56.7
Min nTPM: 42.8
Sample A Male 42.8
Sample B Male 48.6
Sample C Female 56.7
Sample D Female 47.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.2
79904406 Antisense, RP_071218_03_D06, Mouse strain C57BL/6J (56 days, male) 2.7
1202 Antisense, RP_Baylor_103139, Mouse strain C57BL/6J (56 days, male) 1.7
Pallidum
Expression energy: 1.9
79904406 Antisense, RP_071218_03_D06, Mouse strain C57BL/6J (56 days, male) 2.3
1202 Antisense, RP_Baylor_103139, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.