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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.9 nTPM
HPA:50.9 nTPM
GTEx:30.5 nTPM
FANTOM5:143.6 Scaled Tags Per Million
Pig:15.6 nTPM
Mouse:38.4 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Hippocampus
nTPM: 41.8
1855 Male, age 76, left hemisphere 50.6
2148 Female, age 91, left hemisphere 42.9
2621 Female, age 67, right hemisphere 41.9
1898 Male, age 80, left hemisphere 39.2
2529 Female, age 94, left hemisphere 38.2
1911 Female, age 85, right hemisphere 38.0
Dentate gyrus
nTPM: 43.8
2531 Female, age 67, both hemispheres 53.4
2010 Male, age 76, both hemispheres 48.5
2530 Female, age 94, left hemisphere 46.1
2246 Female, age 85, both hemispheres 43.6
1927 Female, age 91, both hemispheres 37.9
2528 Male, age 74, both hemispheres 33.5
Entorhinal gyrus
nTPM: 42.9
2686 Male, age 75, right hemisphere 52.5
1787 Male, age 76, left hemisphere 46.8
2613 Female, age 94, left hemisphere 44.0
1938 Female, age 85, left hemisphere 42.3
2764 Male, age 80, right hemisphere 38.5
2117 Female, age 91, right hemisphere 33.7
Hippocampus, CA1
nTPM: 50.2
2045 Male, age 76, both hemispheres 79.6
2749 Male, age 80, left hemisphere 55.3
2082 Female, age 91, right hemisphere 45.9
1873 Female, age 85, both hemispheres 37.9
2527 Male, age 74, both hemispheres 32.2
Hippocampus, CA2
nTPM: 41.3
1892 Male, age 76, both hemispheres 51.0
2437 Female, age 94, left hemisphere 47.5
1940 Female, age 85, left hemisphere 41.2
2113 Female, age 91, right hemisphere 40.8
1963 Male, age 80, left hemisphere 34.8
2249 Male, age 74, both hemispheres 32.4
Hippocampus, CA3
nTPM: 50.9
1867 Male, age 76, both hemispheres 69.1
2861 Female, age 67, both hemispheres 58.9
2137 Male, age 80, left hemisphere 50.9
2436 Male, age 74, both hemispheres 44.6
1891 Female, age 85, both hemispheres 41.5
2620 Female, age 94, left hemisphere 40.4
Parahippocampal cortex
nTPM: 43.9
2532 Female, age 72, left hemisphere 68.1
2018 Male, age 76, both hemispheres 57.5
1933 Female, age 85, both hemispheres 44.1
2693 Female, age 94, both hemispheres 42.4
2622 Female, age 67, right hemisphere 41.7
1850 Male, age 80, both hemispheres 41.6
2250 Female, age 67, right hemisphere 41.0
1990 Female, age 91, right hemisphere 36.3
2245 Female, age 91, both hemispheres 36.1
2692 Male, age 74, both hemispheres 30.6
Perirhinal gyrus
nTPM: 46.7
1841 Female, age 85, right hemisphere 54.0
2521 Female, age 94, right hemisphere 51.2
1794 Male, age 80, right hemisphere 44.0
2848 Male, age 76, right hemisphere 42.4
1847 Female, age 91, left hemisphere 41.9
Subiculum
nTPM: 41.9
2042 Male, age 76, both hemispheres 51.5
1977 Female, age 85, both hemispheres 43.9
1901 Male, age 80, both hemispheres 41.3
2438 Female, age 94, left hemisphere 39.8
2729 Female, age 91, right hemisphere 39.6
2619 Male, age 74, both hemispheres 35.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 30.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 30.5
Samples: 197

Max nTPM: 109.4
Min nTPM: 10.8
Std nTPM: 13.9
Median nTPM: 27.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 109.4
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 84.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 70.5
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 65.8
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 62.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 61.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 61.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 61.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 58.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 57.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 143.6
FF:10153-102I9 76 years, female 157.4
FF:10169-103B7 60 years, female 129.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 17.4
Min nTPM: 10.9
Sample A Female 12.0
Sample B Female 12.4
Sample C Male 17.4
Sample D Male 10.9
Entorhinal cortex
nTPM: 15.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.0
Sample A Female 17.1
Sample B Female 12.0
Sample C Male 18.5
Sample D Male 14.9
Subiculum
nTPM: 15.5
Samples: 4

Max nTPM: 19.0
Min nTPM: 12.8
Sample A Female 19.0
Sample B Female 12.8
Sample C Male 16.9
Sample D Male 13.1
Ventral hippocampus
nTPM: 13.5
Samples: 4

Max nTPM: 15.9
Min nTPM: 11.0
Sample A Female 11.6
Sample B Female 11.0
Sample C Male 15.9
Sample D Male 15.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.4
Samples: 4

Max nTPM: 43.5
Min nTPM: 36.1
Sample A Male 37.1
Sample B Male 36.7
Sample C Female 36.1
Sample D Female 43.5
Hippocampal formation
nTPM: 35.1
Samples: 4

Max nTPM: 39.1
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 36.7
Sample C Female 39.1
Sample D Female 32.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
1202 Antisense, RP_Baylor_103139, Mouse strain C57BL/6J (56 days, male) 2.9
79904406 Antisense, RP_071218_03_D06, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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