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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.8 nTPM
HPA:30.8 nTPM
GTEx:24.6 nTPM
FANTOM5:23.6 Scaled Tags Per Million
Pig:6.3 nTPM
Mouse:7.8 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 30.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.1
2481 Female, age 94, left hemisphere 29.5
2288 Male, age 75, left hemisphere 25.4
1857 Female, age 85, left hemisphere 25.3
2289 Male, age 61, right hemisphere 24.8
2290 Female, age 72, unknown 23.3
1854 Male, age 80, left hemisphere 20.7
2846 Female, age 79, unknown 18.1
1781 Male, age 74, unknown 17.8
Claustrum
nTPM: 17.2
2568 Male, age 61, both hemispheres 19.9
2645 Female, age 72, unknown 19.8
2491 Male, age 75, both hemispheres 19.1
2196 Female, age 79, unknown 17.2
2198 Male, age 80, both hemispheres 17.2
2284 Female, age 91, both hemispheres 17.0
1956 Male, age 74, unknown 15.0
2392 Female, age 94, both hemispheres 15.0
2292 Female, age 85, both hemispheres 14.3
Globus pallidus, externus
nTPM: 30.8
2567 Female, age 72, unknown 36.8
2646 Male, age 61, right hemisphere 33.8
1996 Male, age 80, right hemisphere 31.8
2772 Female, age 79, unknown 28.5
2395 Male, age 75, both hemispheres 22.9
Globus pallidus, internus
nTPM: 28.4
2287 Male, age 75, right hemisphere 31.7
2483 Female, age 94, right hemisphere 30.0
1818 Male, age 74, unknown 29.3
2037 Male, age 80, right hemisphere 29.1
2566 Female, age 72, unknown 29.1
2111 Female, age 85, right hemisphere 27.5
2778 Female, age 91, both hemispheres 22.4
Nucleus accumbens
nTPM: 20.6
1806 Female, age 85, left hemisphere 27.0
2286 Male, age 75, left hemisphere 25.6
2732 Male, age 80, right hemisphere 21.3
2391 Female, age 94, left hemisphere 19.4
1783 Male, age 74, unknown 19.3
2698 Female, age 72, unknown 19.1
2824 Male, age 61, right hemisphere 17.3
1856 Female, age 91, right hemisphere 15.4
Nucleus basalis of Meynert
nTPM: 22.8
2569 Male, age 61, both hemispheres 37.5
2484 Female, age 94, left hemisphere 20.8
2821 Male, age 75, both hemispheres 17.2
2393 Male, age 80, right hemisphere 15.6
Nucleus of the diagonal band
nTPM: 19.0
1979 Male, age 74, unknown 25.0
2195 Female, age 85, both hemispheres 19.5
2775 Male, age 80, right hemisphere 17.9
1812 Female, age 91, both hemispheres 17.0
2029 Male, age 61, right hemisphere 15.6
Olfactory tubercle
nTPM: 17.8
2856 Male, age 75, right hemisphere 19.5
2487 Female, age 94, left hemisphere 18.4
1846 Male, age 80, right hemisphere 17.3
1998 Female, age 91, both hemispheres 15.9
Putamen
nTPM: 21.1
2647 Male, age 75, left hemisphere 28.7
2489 Female, age 72, unknown 23.7
2482 Female, age 94, left hemisphere 21.6
1829 Male, age 74, unknown 20.6
2466 Female, age 79, unknown 19.0
1838 Male, age 80, right hemisphere 18.8
1937 Female, age 91, right hemisphere 15.4
Septal nuclei
nTPM: 20.4
2059 Female, age 85, both hemispheres 27.5
2394 Male, age 61, left hemisphere 23.9
2199 Male, age 80, right hemisphere 23.1
1960 Male, age 74, unknown 18.6
2009 Female, age 91, both hemispheres 16.8
2629 Female, age 94, right hemisphere 16.8
2031 Female, age 72, unknown 16.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 246

Max nTPM: 82.9
Min nTPM: 4.3
Std nTPM: 13.0
Median nTPM: 21.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 82.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 80.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 67.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 61.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 58.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 57.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 54.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 52.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 51.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 51.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 21.7
Samples: 246

Max nTPM: 66.8
Min nTPM: 4.1
Std nTPM: 10.9
Median nTPM: 19.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 66.8
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 63.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 56.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 54.9
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 54.1
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 53.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 52.4
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 48.6
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 48.2
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 45.8
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 44.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.2
Samples: 205

Max nTPM: 68.1
Min nTPM: 2.4
Std nTPM: 13.1
Median nTPM: 21.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 68.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 66.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 65.2
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 58.1
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 56.0
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 55.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 55.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 52.5
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 51.2
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 50.7
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 49.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.6
FF:10164-103B2 76 years, female 23.6
Globus pallidus
Scaled Tags Per Million: 17.9
FF:10161-103A8 76 years, female 24.0
FF:10175-103C4 60 years, female 11.8
Nucleus accumbens
Scaled Tags Per Million: 16.6
FF:10037-101F1 23-56 years, mixed 16.6
Putamen
Scaled Tags Per Million: 22.3
FF:10176-103C5 60 years, female 22.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.3
Pig sample Sample description nTPM
Caudate
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 6.9
Sample C Male 6.6
Sample D Male 6.2
Putamen
nTPM: 4.5
Samples: 4

Max nTPM: 5.8
Min nTPM: 3.5
Sample A Female 5.8
Sample B Female 3.5
Sample C Male 3.9
Sample D Male 4.7
Septum
nTPM: 5.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 4.6
Sample C Male 8.0
Sample D Male 6.1
Ventral pallidum
nTPM: 6.3
Samples: 4

Max nTPM: 11.3
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 5.1
Sample C Male 11.3
Sample D Male 5.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.8
Samples: 4

Max nTPM: 9.4
Min nTPM: 6.3
Sample A Male 7.9
Sample B Male 9.4
Sample C Female 6.3
Sample D Female 7.7
Septum
nTPM: 7.6
Samples: 4

Max nTPM: 8.4
Min nTPM: 7.2
Sample A Male 8.4
Sample B Male 7.6
Sample C Female 7.2
Sample D Female 7.3
Ventral forebrain
nTPM: 7.8
Samples: 4

Max nTPM: 8.6
Min nTPM: 7.2
Sample A Male 8.6
Sample B Male 7.2
Sample C Female 7.3
Sample D Female 7.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69672952 Antisense, RP_050428_04_H03, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69672952 Antisense, RP_050428_04_H03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.