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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA:65.1 nTPM
GTEx:54.3 nTPM
FANTOM5:79.2 Scaled Tags Per Million
Pig:35.1 nTPM
Mouse:74.9 nTPM
Allen mouse:4.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.8
1870 Female, age 42, unknown 66.6
2019 Male, age 18, unknown 65.4
1833 Male, age 53, unknown 65.1
2586 Male, age 75, left hemisphere 64.6
2411 Female, age 72, unknown 64.4
1830 Male, age 51, unknown 63.3
2828 Female, age 72, unknown 61.7
1827 Male, age 72, unknown 60.5
2219 Male, age 76, both hemispheres 60.1
2666 Male, age 74, left hemisphere 56.8
Dorsal raphe nucleus
nTPM: 62.4
2750 Male, age 76, both hemispheres 67.3
1828 Male, age 53, unknown 62.3
2047 Male, age 72, unknown 61.9
2298 Female, age 72, unknown 61.3
2016 Female, age 72, unknown 59.0
Inferior colliculus
nTPM: 58.8
1848 Female, age 42, unknown 59.5
1890 Male, age 53, unknown 59.3
2097 Female, age 72, unknown 59.0
2849 Male, age 72, unknown 57.3
Median raphe nucleus
nTPM: 61.3
2220 Male, age 76, midline 61.3
Pedunculopontine tegmental nucleus
nTPM: 62.8
2334 Male, age 80, both hemispheres 64.2
2338 Male, age 61, both hemispheres 63.7
1921 Female, age 85, both hemispheres 60.6
Periaquaductal grey, anterior
nTPM: 59.4
1947 Male, age 18, unknown 62.2
2502 Female, age 75, unknown 60.0
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 57.9
2850 Male, age 76, both hemispheres 59.1
1831 Male, age 72, unknown 57.7
1840 Male, age 53, unknown 57.5
2464 Female, age 72, unknown 57.3
Periaquaductal grey, lateral
nTPM: 60.2
2053 Male, age 18, unknown 60.8
2140 Male, age 76, both hemispheres 60.4
2272 Male, age 74, both hemispheres 59.6
Pretectal area
nTPM: 61.3
1817 Female, age 42, unknown 64.3
1815 Male, age 53, unknown 63.8
2407 Male, age 75, both hemispheres 63.3
2007 Male, age 72, unknown 62.1
2667 Female, age 75, unknown 62.1
1944 Female, age 72, unknown 60.9
1816 Male, age 51, unknown 60.4
2316 Male, age 76, right hemisphere 60.3
2224 Female, age 72, unknown 60.2
2273 Male, age 74, both hemispheres 59.8
2825 Male, age 18, unknown 57.6
Red nucleus
nTPM: 65.1
1865 Male, age 51, unknown 70.1
1821 Female, age 72, unknown 68.8
1904 Male, age 53, unknown 67.5
1954 Female, age 42, unknown 66.3
2769 Male, age 72, unknown 65.9
2785 Male, age 18, unknown 64.9
2823 Male, age 76, right hemisphere 64.3
2588 Male, age 74, left hemisphere 63.7
2227 Male, age 72, unknown 63.5
2725 Female, age 75, unknown 63.3
2503 Female, age 72, unknown 63.2
2584 Male, age 75, left hemisphere 59.5
Substantia nigra
nTPM: 63.4
1851 Male, age 51, unknown 66.8
2583 Male, age 75, right hemisphere 65.5
2241 Male, age 72, unknown 65.0
1916 Female, age 42, unknown 64.7
2590 Female, age 75, unknown 63.4
2699 Male, age 18, unknown 63.4
1889 Female, age 72, unknown 62.2
2665 Male, age 74, both hemispheres 61.3
2409 Female, age 72, unknown 61.1
1941 Male, age 53, unknown 60.9
Superior colliculus
nTPM: 60.6
1895 Male, age 76, right hemisphere 65.7
1913 Female, age 42, unknown 64.1
1995 Male, age 72, unknown 63.1
2587 Male, age 74, left hemisphere 62.7
2668 Female, age 75, unknown 60.6
1839 Male, age 51, unknown 59.2
2261 Male, age 18, unknown 58.6
1796 Male, age 53, unknown 58.1
2664 Male, age 75, both hemispheres 57.4
2087 Female, age 72, unknown 57.0
Ventral tegmental area
nTPM: 62.7
2410 Female, age 72, unknown 64.5
2223 Female, age 72, unknown 64.4
1915 Female, age 42, unknown 63.2
2218 Male, age 76, both hemispheres 62.7
1942 Male, age 51, unknown 60.6
2021 Male, age 53, unknown 60.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.3
Samples: 139

Max nTPM: 127.0
Min nTPM: 38.3
Std nTPM: 11.7
Median nTPM: 51.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 127.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 86.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 84.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 81.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 78.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 76.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 73.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 72.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 71.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.2
FF:10158-103A5 76 years, female 79.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.1
Pig sample Sample description nTPM
Midbrain
nTPM: 33.0
Samples: 4

Max nTPM: 41.9
Min nTPM: 28.2
Sample A Female 41.9
Sample B Female 28.2
Sample C Male 32.2
Sample D Male 29.6
Periaqueductal gray
nTPM: 26.5
Samples: 3

Max nTPM: 29.6
Min nTPM: 24.8
Sample B Female 24.8
Sample C Male 29.6
Sample D Male 25.1
Substantia nigra
nTPM: 32.4
Samples: 4

Max nTPM: 41.1
Min nTPM: 26.8
Sample A Female 41.1
Sample B Female 29.3
Sample C Male 32.5
Sample D Male 26.8
Superior colliculi
nTPM: 35.1
Samples: 4

Max nTPM: 39.9
Min nTPM: 31.4
Sample A Female 39.9
Sample B Female 37.1
Sample C Male 32.1
Sample D Male 31.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.9
Samples: 4

Max nTPM: 77.2
Min nTPM: 69.9
Sample A Male 69.9
Sample B Male 76.3
Sample C Female 76.2
Sample D Female 77.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
323586 Antisense, RP_040609_01_F11, Mouse strain C57BL/6J (56 days, male) 5.0
76098401 Antisense, RP_060626_01_H02, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.