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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:14.4 nTPM
HPA:14.4 nTPM
GTEx:16.5 nTPM
FANTOM5:10.6 Scaled Tags Per Million
Pig:4.2 nTPM
Mouse:1.3 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA050358Antibody CAB003705
Glial cells Not detectedHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 14.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.7
1911 Female, age 85, right hemisphere 13.6
2529 Female, age 94, left hemisphere 13.0
1855 Male, age 76, left hemisphere 12.7
2621 Female, age 67, right hemisphere 12.5
2148 Female, age 91, left hemisphere 12.4
1898 Male, age 80, left hemisphere 11.9
Dentate gyrus
nTPM: 12.8
2530 Female, age 94, left hemisphere 15.6
2010 Male, age 76, both hemispheres 13.9
2246 Female, age 85, both hemispheres 12.2
2528 Male, age 74, both hemispheres 12.2
2531 Female, age 67, both hemispheres 12.0
1927 Female, age 91, both hemispheres 10.9
Entorhinal gyrus
nTPM: 12.6
2117 Female, age 91, right hemisphere 15.3
2764 Male, age 80, right hemisphere 13.9
1787 Male, age 76, left hemisphere 12.0
2686 Male, age 75, right hemisphere 11.7
1938 Female, age 85, left hemisphere 11.5
2613 Female, age 94, left hemisphere 11.3
Hippocampus, CA1
nTPM: 11.4
2082 Female, age 91, right hemisphere 12.2
1873 Female, age 85, both hemispheres 11.9
2527 Male, age 74, both hemispheres 11.6
2749 Male, age 80, left hemisphere 10.8
2045 Male, age 76, both hemispheres 10.4
Hippocampus, CA2
nTPM: 12.6
1963 Male, age 80, left hemisphere 14.0
2249 Male, age 74, both hemispheres 13.1
1940 Female, age 85, left hemisphere 12.5
2437 Female, age 94, left hemisphere 12.5
2113 Female, age 91, right hemisphere 12.3
1892 Male, age 76, both hemispheres 11.1
Hippocampus, CA3
nTPM: 12.4
2436 Male, age 74, both hemispheres 16.5
1891 Female, age 85, both hemispheres 13.5
1867 Male, age 76, both hemispheres 12.8
2861 Female, age 67, both hemispheres 10.6
2620 Female, age 94, left hemisphere 10.5
2137 Male, age 80, left hemisphere 10.3
Parahippocampal cortex
nTPM: 11.7
2532 Female, age 72, left hemisphere 13.3
2692 Male, age 74, both hemispheres 13.1
2018 Male, age 76, both hemispheres 13.0
1990 Female, age 91, right hemisphere 12.7
2245 Female, age 91, both hemispheres 11.8
1850 Male, age 80, both hemispheres 11.7
1933 Female, age 85, both hemispheres 11.2
2693 Female, age 94, both hemispheres 10.4
2250 Female, age 67, right hemisphere 10.0
2622 Female, age 67, right hemisphere 9.9
Perirhinal gyrus
nTPM: 10.4
2848 Male, age 76, right hemisphere 11.1
2521 Female, age 94, right hemisphere 11.0
1794 Male, age 80, right hemisphere 10.4
1841 Female, age 85, right hemisphere 9.9
1847 Female, age 91, left hemisphere 9.8
Subiculum
nTPM: 14.4
2042 Male, age 76, both hemispheres 17.7
1901 Male, age 80, both hemispheres 16.2
2438 Female, age 94, left hemisphere 14.6
1977 Female, age 85, both hemispheres 13.1
2619 Male, age 74, both hemispheres 12.4
2729 Female, age 91, right hemisphere 12.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.5
Samples: 197

Max nTPM: 72.2
Min nTPM: 1.8
Std nTPM: 10.7
Median nTPM: 14.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 72.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 50.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 47.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 41.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 41.5
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 38.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 38.6
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 38.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 38.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 38.0
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 37.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 10.6
FF:10153-102I9 76 years, female 15.0
FF:10169-103B7 60 years, female 6.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.2
Samples: 4

Max nTPM: 7.1
Min nTPM: 1.5
Sample A Female 4.7
Sample B Female 3.4
Sample C Male 7.1
Sample D Male 1.5
Entorhinal cortex
nTPM: 1.7
Samples: 4

Max nTPM: 2.1
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 2.1
Sample C Male 1.6
Sample D Male 1.7
Subiculum
nTPM: 1.9
Samples: 4

Max nTPM: 2.2
Min nTPM: 1.5
Sample A Female 1.5
Sample B Female 2.2
Sample C Male 1.8
Sample D Male 2.1
Ventral hippocampus
nTPM: 2.8
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.5
Sample A Female 2.6
Sample B Female 1.5
Sample C Male 3.5
Sample D Male 3.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.8
Samples: 4

Max nTPM: 0.9
Min nTPM: 0.6
Sample A Male 0.9
Sample B Male 0.7
Sample C Female 0.9
Sample D Female 0.6
Hippocampal formation
nTPM: 1.3
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.8
Sample A Male 0.8
Sample B Male 1.2
Sample C Female 1.8
Sample D Female 1.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
2011 Antisense, RP_040507_02_F06, Mouse strain C57BL/6J (56 days, male) 0.5
2010 Antisense, RP_040507_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.