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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:55.6 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:128.7 nTPM
Mouse:266.5 nTPM
Allen mouse:20.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
1827 Male, age 72, unknown 46.4
2666 Male, age 74, left hemisphere 36.0
2219 Male, age 76, both hemispheres 35.2
2411 Female, age 72, unknown 29.8
2828 Female, age 72, unknown 26.3
1833 Male, age 53, unknown 24.0
2019 Male, age 18, unknown 22.0
1870 Female, age 42, unknown 20.5
1830 Male, age 51, unknown 16.4
2586 Male, age 75, left hemisphere 13.7
Dorsal raphe nucleus
nTPM: 16.9
2298 Female, age 72, unknown 31.5
2750 Male, age 76, both hemispheres 19.3
2047 Male, age 72, unknown 15.5
1828 Male, age 53, unknown 11.0
2016 Female, age 72, unknown 7.2
Inferior colliculus
nTPM: 31.3
2097 Female, age 72, unknown 44.1
1848 Female, age 42, unknown 31.0
1890 Male, age 53, unknown 26.9
2849 Male, age 72, unknown 23.1
Median raphe nucleus
nTPM: 30.6
2220 Male, age 76, midline 30.6
Pedunculopontine tegmental nucleus
nTPM: 26.5
1921 Female, age 85, both hemispheres 40.4
2334 Male, age 80, both hemispheres 23.9
2338 Male, age 61, both hemispheres 15.0
Periaquaductal grey, anterior
nTPM: 40.2
2502 Female, age 75, unknown 51.4
1947 Male, age 18, unknown 39.1
1795 Male, age 51, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 18.6
1840 Male, age 53, unknown 21.8
1831 Male, age 72, unknown 21.0
2464 Female, age 72, unknown 18.5
2850 Male, age 76, both hemispheres 13.0
Periaquaductal grey, lateral
nTPM: 12.9
2053 Male, age 18, unknown 20.4
2140 Male, age 76, both hemispheres 13.3
2272 Male, age 74, both hemispheres 5.1
Pretectal area
nTPM: 31.8
1816 Male, age 51, unknown 57.0
2667 Female, age 75, unknown 43.7
2007 Male, age 72, unknown 43.6
1817 Female, age 42, unknown 42.1
1944 Female, age 72, unknown 41.9
1815 Male, age 53, unknown 35.2
2825 Male, age 18, unknown 23.5
2224 Female, age 72, unknown 23.2
2316 Male, age 76, right hemisphere 20.7
2407 Male, age 75, both hemispheres 16.2
2273 Male, age 74, both hemispheres 2.8
Red nucleus
nTPM: 17.8
1821 Female, age 72, unknown 29.4
1954 Female, age 42, unknown 23.7
2785 Male, age 18, unknown 19.5
2584 Male, age 75, left hemisphere 19.1
2823 Male, age 76, right hemisphere 18.4
2769 Male, age 72, unknown 16.8
2227 Male, age 72, unknown 16.2
2503 Female, age 72, unknown 15.6
1904 Male, age 53, unknown 15.3
2588 Male, age 74, left hemisphere 14.6
1865 Male, age 51, unknown 12.8
2725 Female, age 75, unknown 12.0
Substantia nigra
nTPM: 29.1
1916 Female, age 42, unknown 46.5
1941 Male, age 53, unknown 42.7
1889 Female, age 72, unknown 42.4
2665 Male, age 74, both hemispheres 41.4
1851 Male, age 51, unknown 31.8
2241 Male, age 72, unknown 29.7
2409 Female, age 72, unknown 23.7
2699 Male, age 18, unknown 17.8
2590 Female, age 75, unknown 8.5
2583 Male, age 75, right hemisphere 6.1
Superior colliculus
nTPM: 26.4
1895 Male, age 76, right hemisphere 39.4
2087 Female, age 72, unknown 38.0
1796 Male, age 53, unknown 35.4
2668 Female, age 75, unknown 35.3
2261 Male, age 18, unknown 33.7
1839 Male, age 51, unknown 25.8
2664 Male, age 75, both hemispheres 21.3
2587 Male, age 74, left hemisphere 16.8
1913 Female, age 42, unknown 11.3
1995 Male, age 72, unknown 6.8
Ventral tegmental area
nTPM: 26.1
2410 Female, age 72, unknown 39.7
2218 Male, age 76, both hemispheres 38.0
1915 Female, age 42, unknown 34.9
1942 Male, age 51, unknown 23.6
2021 Male, age 53, unknown 10.8
2223 Female, age 72, unknown 9.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.6
Samples: 139

Max nTPM: 236.1
Min nTPM: 4.0
Std nTPM: 44.3
Median nTPM: 42.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 236.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 214.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 158.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 151.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 148.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 142.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 130.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 129.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 128.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 127.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 126.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 128.7
Pig sample Sample description nTPM
Midbrain
nTPM: 117.7
Samples: 4

Max nTPM: 230.7
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 60.7
Sample C Male 230.7
Sample D Male 152.5
Periaqueductal gray
nTPM: 61.4
Samples: 3

Max nTPM: 80.4
Min nTPM: 50.1
Sample B Female 53.8
Sample C Male 80.4
Sample D Male 50.1
Substantia nigra
nTPM: 88.5
Samples: 4

Max nTPM: 144.6
Min nTPM: 28.2
Sample A Female 123.1
Sample B Female 57.9
Sample C Male 144.6
Sample D Male 28.2
Superior colliculi
nTPM: 128.7
Samples: 4

Max nTPM: 183.5
Min nTPM: 62.0
Sample A Female 119.6
Sample B Female 62.0
Sample C Male 183.5
Sample D Male 149.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 266.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 266.5
Samples: 4

Max nTPM: 302.7
Min nTPM: 231.1
Sample A Male 231.1
Sample B Male 260.3
Sample C Female 302.7
Sample D Female 271.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 20.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.9
69012765 Antisense, RP_050309_01_D10, Mouse strain C57BL/6J (56 days, male) 20.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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