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RCAN1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:57.5 nTPM
HPA:57.5 nTPM
GTEx:65.4 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:45.5 nTPM
Allen mouse:2.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA068436
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Hippocampus
nTPM: 54.7
2529 Female, age 94, left hemisphere 56.2
1911 Female, age 85, right hemisphere 55.2
1898 Male, age 80, left hemisphere 54.9
2148 Female, age 91, left hemisphere 54.6
2621 Female, age 67, right hemisphere 54.4
1855 Male, age 76, left hemisphere 52.8
Dentate gyrus
nTPM: 55.1
2530 Female, age 94, left hemisphere 60.1
1927 Female, age 91, both hemispheres 55.7
2246 Female, age 85, both hemispheres 54.7
2010 Male, age 76, both hemispheres 54.5
2531 Female, age 67, both hemispheres 53.4
2528 Male, age 74, both hemispheres 51.9
Entorhinal gyrus
nTPM: 56.4
2686 Male, age 75, right hemisphere 58.4
2117 Female, age 91, right hemisphere 57.3
1787 Male, age 76, left hemisphere 56.5
2764 Male, age 80, right hemisphere 55.8
1938 Female, age 85, left hemisphere 55.5
2613 Female, age 94, left hemisphere 54.7
Hippocampus, CA1
nTPM: 54.8
2749 Male, age 80, left hemisphere 59.8
2045 Male, age 76, both hemispheres 55.8
1873 Female, age 85, both hemispheres 55.3
2527 Male, age 74, both hemispheres 51.7
2082 Female, age 91, right hemisphere 51.2
Hippocampus, CA2
nTPM: 55.7
1963 Male, age 80, left hemisphere 59.4
2249 Male, age 74, both hemispheres 56.7
1892 Male, age 76, both hemispheres 56.2
1940 Female, age 85, left hemisphere 55.2
2437 Female, age 94, left hemisphere 54.1
2113 Female, age 91, right hemisphere 52.7
Hippocampus, CA3
nTPM: 56.5
1867 Male, age 76, both hemispheres 60.3
2436 Male, age 74, both hemispheres 59.1
2137 Male, age 80, left hemisphere 58.3
1891 Female, age 85, both hemispheres 57.2
2620 Female, age 94, left hemisphere 53.0
2861 Female, age 67, both hemispheres 51.3
Parahippocampal cortex
nTPM: 53.1
1990 Female, age 91, right hemisphere 56.0
2692 Male, age 74, both hemispheres 54.3
1850 Male, age 80, both hemispheres 54.1
2532 Female, age 72, left hemisphere 53.8
1933 Female, age 85, both hemispheres 53.4
2018 Male, age 76, both hemispheres 53.2
2245 Female, age 91, both hemispheres 52.8
2693 Female, age 94, both hemispheres 52.1
2250 Female, age 67, right hemisphere 50.5
2622 Female, age 67, right hemisphere 50.3
Perirhinal gyrus
nTPM: 54.1
2848 Male, age 76, right hemisphere 55.1
1847 Female, age 91, left hemisphere 54.9
2521 Female, age 94, right hemisphere 53.8
1794 Male, age 80, right hemisphere 53.7
1841 Female, age 85, right hemisphere 52.7
Subiculum
nTPM: 57.5
2042 Male, age 76, both hemispheres 64.1
1977 Female, age 85, both hemispheres 59.7
1901 Male, age 80, both hemispheres 58.4
2438 Female, age 94, left hemisphere 57.1
2729 Female, age 91, right hemisphere 53.0
2619 Male, age 74, both hemispheres 52.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 65.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.4
Samples: 197

Max nTPM: 155.6
Min nTPM: 38.6
Std nTPM: 20.9
Median nTPM: 59.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 155.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 150.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 139.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 139.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 131.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 126.9
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 123.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 114.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 114.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 113.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 111.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 41.8
FF:10169-103B7 60 years, female 41.8
FF:10153-102I9 76 years, female 41.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 21.7
Samples: 4

Max nTPM: 24.2
Min nTPM: 19.5
Sample A Female 24.2
Sample B Female 20.4
Sample C Male 22.5
Sample D Male 19.5
Entorhinal cortex
nTPM: 23.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.1
Sample A Female 20.5
Sample B Female 27.2
Sample C Male 25.5
Sample D Male 19.1
Subiculum
nTPM: 25.8
Samples: 4

Max nTPM: 35.2
Min nTPM: 20.9
Sample A Female 35.2
Sample B Female 24.7
Sample C Male 22.2
Sample D Male 20.9
Ventral hippocampus
nTPM: 20.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 17.4
Sample A Female 20.3
Sample B Female 17.4
Sample C Male 23.6
Sample D Male 21.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 45.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 47.2
Min nTPM: 41.2
Sample A Male 41.2
Sample B Male 45.0
Sample C Female 44.9
Sample D Female 47.2
Hippocampal formation
nTPM: 45.5
Samples: 4

Max nTPM: 51.2
Min nTPM: 40.3
Sample A Male 49.2
Sample B Male 41.2
Sample C Female 51.2
Sample D Female 40.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.2
79749575 Antisense, RP_071204_02_C10, Mouse strain C57BL/6J (56 days, male) 2.2

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