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RCAN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.3 nTPM
HPA:65.3 nTPM
GTEx:82.0 nTPM
FANTOM5:77.4 Scaled Tags Per Million
Pig:22.0 nTPM
Mouse:40.7 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.9
2019 Male, age 18, unknown 69.3
1870 Female, age 42, unknown 69.0
2586 Male, age 75, left hemisphere 68.0
2411 Female, age 72, unknown 67.0
1833 Male, age 53, unknown 64.5
1830 Male, age 51, unknown 63.6
2666 Male, age 74, left hemisphere 62.6
2828 Female, age 72, unknown 59.8
1827 Male, age 72, unknown 57.8
2219 Male, age 76, both hemispheres 57.5
Dorsal raphe nucleus
nTPM: 61.4
2750 Male, age 76, both hemispheres 69.9
2047 Male, age 72, unknown 62.8
1828 Male, age 53, unknown 58.4
2298 Female, age 72, unknown 58.2
2016 Female, age 72, unknown 57.9
Inferior colliculus
nTPM: 58.2
1848 Female, age 42, unknown 58.9
2097 Female, age 72, unknown 58.2
1890 Male, age 53, unknown 57.9
2849 Male, age 72, unknown 57.7
Median raphe nucleus
nTPM: 63.2
2220 Male, age 76, midline 63.2
Pedunculopontine tegmental nucleus
nTPM: 63.1
2334 Male, age 80, both hemispheres 65.1
2338 Male, age 61, both hemispheres 62.2
1921 Female, age 85, both hemispheres 62.1
Periaquaductal grey, anterior
nTPM: 57.0
2502 Female, age 75, unknown 58.5
1947 Male, age 18, unknown 56.4
1795 Male, age 51, unknown 56.0
Periaquaductal grey, dorsal
nTPM: 58.8
1831 Male, age 72, unknown 62.1
1840 Male, age 53, unknown 59.8
2464 Female, age 72, unknown 59.1
2850 Male, age 76, both hemispheres 54.3
Periaquaductal grey, lateral
nTPM: 54.5
2053 Male, age 18, unknown 57.1
2272 Male, age 74, both hemispheres 54.4
2140 Male, age 76, both hemispheres 52.0
Pretectal area
nTPM: 57.6
1817 Female, age 42, unknown 63.4
1815 Male, age 53, unknown 61.5
2407 Male, age 75, both hemispheres 59.3
2007 Male, age 72, unknown 58.8
2825 Male, age 18, unknown 57.5
2224 Female, age 72, unknown 56.2
1816 Male, age 51, unknown 56.0
1944 Female, age 72, unknown 56.0
2316 Male, age 76, right hemisphere 55.9
2667 Female, age 75, unknown 54.9
2273 Male, age 74, both hemispheres 54.3
Red nucleus
nTPM: 65.3
2588 Male, age 74, left hemisphere 69.3
1904 Male, age 53, unknown 69.0
1821 Female, age 72, unknown 68.3
2785 Male, age 18, unknown 67.6
2503 Female, age 72, unknown 66.4
2584 Male, age 75, left hemisphere 64.8
1865 Male, age 51, unknown 63.9
1954 Female, age 42, unknown 63.9
2227 Male, age 72, unknown 63.7
2769 Male, age 72, unknown 63.3
2725 Female, age 75, unknown 62.5
2823 Male, age 76, right hemisphere 60.5
Substantia nigra
nTPM: 61.2
1851 Male, age 51, unknown 65.5
1889 Female, age 72, unknown 63.3
1916 Female, age 42, unknown 62.9
2241 Male, age 72, unknown 62.6
2583 Male, age 75, right hemisphere 62.2
2409 Female, age 72, unknown 60.6
2590 Female, age 75, unknown 59.9
2665 Male, age 74, both hemispheres 59.9
2699 Male, age 18, unknown 58.6
1941 Male, age 53, unknown 56.4
Superior colliculus
nTPM: 60.0
2668 Female, age 75, unknown 64.8
1913 Female, age 42, unknown 63.2
2587 Male, age 74, left hemisphere 62.1
1839 Male, age 51, unknown 61.2
1995 Male, age 72, unknown 60.7
1895 Male, age 76, right hemisphere 60.2
1796 Male, age 53, unknown 59.2
2664 Male, age 75, both hemispheres 58.2
2087 Female, age 72, unknown 56.0
2261 Male, age 18, unknown 54.0
Ventral tegmental area
nTPM: 62.8
2223 Female, age 72, unknown 66.8
2410 Female, age 72, unknown 65.3
1915 Female, age 42, unknown 62.9
2021 Male, age 53, unknown 61.9
1942 Male, age 51, unknown 61.2
2218 Male, age 76, both hemispheres 59.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 82.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 82.0
Samples: 139

Max nTPM: 147.8
Min nTPM: 41.0
Std nTPM: 20.6
Median nTPM: 79.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 147.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 139.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 133.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 130.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 126.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 119.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 119.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 116.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 115.1
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 114.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 112.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.4
FF:10158-103A5 76 years, female 77.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.0
Pig sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 28.2
Min nTPM: 16.6
Sample A Female 28.2
Sample B Female 21.7
Sample C Male 17.5
Sample D Male 16.6
Periaqueductal gray
nTPM: 21.8
Samples: 3

Max nTPM: 25.2
Min nTPM: 19.4
Sample B Female 20.7
Sample C Male 25.2
Sample D Male 19.4
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.3
Sample A Female 26.9
Sample B Female 19.9
Sample C Male 24.9
Sample D Male 16.3
Superior colliculi
nTPM: 17.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.1
Sample A Female 20.1
Sample B Female 15.7
Sample C Male 15.1
Sample D Male 17.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 42.5
Min nTPM: 38.6
Sample A Male 38.6
Sample B Male 40.2
Sample C Female 41.5
Sample D Female 42.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
79749575 Antisense, RP_071204_02_C10, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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