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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
RNA expressioni
Consensus:202.8 nTPM
HPA:202.8 nTPM
GTEx:161.9 nTPM
FANTOM5:71.4 Scaled Tags Per Million
Pig:58.7 nTPM
Mouse:131.0 nTPM
Allen mouse:8.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA038807Antibody HPA039252Antibody CAB047300
Glial cells LowNot detectedNot detected
Neuronal cells MediumHighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 202.8
Sample id Sample description nTPM
Hippocampus
nTPM: 196.8
1898 Male, age 80, left hemisphere 205.6
2529 Female, age 94, left hemisphere 199.7
2621 Female, age 67, right hemisphere 196.7
1855 Male, age 76, left hemisphere 196.2
2148 Female, age 91, left hemisphere 192.8
1911 Female, age 85, right hemisphere 189.7
Dentate gyrus
nTPM: 196.7
2530 Female, age 94, left hemisphere 206.5
2010 Male, age 76, both hemispheres 200.9
1927 Female, age 91, both hemispheres 196.1
2531 Female, age 67, both hemispheres 194.6
2528 Male, age 74, both hemispheres 192.4
2246 Female, age 85, both hemispheres 189.6
Entorhinal gyrus
nTPM: 198.6
2764 Male, age 80, right hemisphere 207.4
1938 Female, age 85, left hemisphere 200.7
1787 Male, age 76, left hemisphere 197.9
2686 Male, age 75, right hemisphere 197.9
2117 Female, age 91, right hemisphere 193.8
2613 Female, age 94, left hemisphere 193.6
Hippocampus, CA1
nTPM: 197.4
2749 Male, age 80, left hemisphere 208.4
2045 Male, age 76, both hemispheres 196.0
1873 Female, age 85, both hemispheres 195.6
2082 Female, age 91, right hemisphere 194.5
2527 Male, age 74, both hemispheres 192.7
Hippocampus, CA2
nTPM: 199.1
1892 Male, age 76, both hemispheres 206.7
1963 Male, age 80, left hemisphere 204.5
2437 Female, age 94, left hemisphere 196.9
2249 Male, age 74, both hemispheres 196.5
1940 Female, age 85, left hemisphere 195.3
2113 Female, age 91, right hemisphere 194.6
Hippocampus, CA3
nTPM: 194.2
2137 Male, age 80, left hemisphere 201.3
1867 Male, age 76, both hemispheres 199.0
1891 Female, age 85, both hemispheres 192.8
2861 Female, age 67, both hemispheres 192.3
2436 Male, age 74, both hemispheres 190.5
2620 Female, age 94, left hemisphere 189.3
Parahippocampal cortex
nTPM: 197.0
1850 Male, age 80, both hemispheres 206.8
1933 Female, age 85, both hemispheres 200.6
1990 Female, age 91, right hemisphere 199.3
2245 Female, age 91, both hemispheres 198.7
2018 Male, age 76, both hemispheres 197.4
2692 Male, age 74, both hemispheres 197.1
2693 Female, age 94, both hemispheres 194.3
2250 Female, age 67, right hemisphere 193.7
2532 Female, age 72, left hemisphere 192.4
2622 Female, age 67, right hemisphere 189.8
Perirhinal gyrus
nTPM: 202.8
1794 Male, age 80, right hemisphere 208.4
1847 Female, age 91, left hemisphere 207.9
1841 Female, age 85, right hemisphere 199.7
2848 Male, age 76, right hemisphere 199.1
2521 Female, age 94, right hemisphere 199.0
Subiculum
nTPM: 193.9
1977 Female, age 85, both hemispheres 200.8
1901 Male, age 80, both hemispheres 198.5
2619 Male, age 74, both hemispheres 195.9
2042 Male, age 76, both hemispheres 192.4
2729 Female, age 91, right hemisphere 188.2
2438 Female, age 94, left hemisphere 187.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 161.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 161.9
Samples: 197

Max nTPM: 320.5
Min nTPM: 83.7
Std nTPM: 37.3
Median nTPM: 154.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 320.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 277.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 276.5
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 250.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 250.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 245.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 239.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 238.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 236.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 235.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 232.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.4
FF:10169-103B7 60 years, female 74.2
FF:10153-102I9 76 years, female 68.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 58.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 58.7
Samples: 4

Max nTPM: 77.5
Min nTPM: 41.9
Sample A Female 77.5
Sample B Female 54.3
Sample C Male 61.2
Sample D Male 41.9
Entorhinal cortex
nTPM: 52.8
Samples: 4

Max nTPM: 59.3
Min nTPM: 43.3
Sample A Female 54.9
Sample B Female 59.3
Sample C Male 53.6
Sample D Male 43.3
Subiculum
nTPM: 49.4
Samples: 4

Max nTPM: 68.4
Min nTPM: 39.1
Sample A Female 68.4
Sample B Female 48.1
Sample C Male 42.1
Sample D Male 39.1
Ventral hippocampus
nTPM: 52.1
Samples: 4

Max nTPM: 60.9
Min nTPM: 37.9
Sample A Female 51.0
Sample B Female 37.9
Sample C Male 58.5
Sample D Male 60.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 131.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 123.6
Samples: 4

Max nTPM: 130.6
Min nTPM: 116.9
Sample A Male 116.9
Sample B Male 125.5
Sample C Female 130.6
Sample D Female 121.4
Hippocampal formation
nTPM: 131.1
Samples: 4

Max nTPM: 143.7
Min nTPM: 123.5
Sample A Male 143.7
Sample B Male 126.6
Sample C Female 123.5
Sample D Female 130.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.1
2503 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 8.1
2504 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 4.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.