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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:215.3 nTPM
HPA:215.3 nTPM
GTEx:197.2 nTPM
FANTOM5:69.5 Scaled Tags Per Million
Pig:79.6 nTPM
Mouse:136.7 nTPM
Allen mouse:6.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 215.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 200.6
2411 Female, age 72, unknown 206.8
2219 Male, age 76, both hemispheres 204.4
2666 Male, age 74, left hemisphere 204.3
1827 Male, age 72, unknown 203.0
1870 Female, age 42, unknown 200.7
2586 Male, age 75, left hemisphere 200.1
1833 Male, age 53, unknown 197.8
2019 Male, age 18, unknown 197.8
2828 Female, age 72, unknown 196.1
1830 Male, age 51, unknown 195.1
Dorsal raphe nucleus
nTPM: 202.0
2298 Female, age 72, unknown 204.8
1828 Male, age 53, unknown 204.1
2047 Male, age 72, unknown 204.0
2750 Male, age 76, both hemispheres 201.8
2016 Female, age 72, unknown 195.4
Inferior colliculus
nTPM: 197.1
1890 Male, age 53, unknown 199.1
2097 Female, age 72, unknown 197.6
1848 Female, age 42, unknown 196.0
2849 Male, age 72, unknown 195.7
Median raphe nucleus
nTPM: 203.3
2220 Male, age 76, midline 203.3
Pedunculopontine tegmental nucleus
nTPM: 199.9
2334 Male, age 80, both hemispheres 201.9
2338 Male, age 61, both hemispheres 199.6
1921 Female, age 85, both hemispheres 198.1
Periaquaductal grey, anterior
nTPM: 200.1
1947 Male, age 18, unknown 203.7
1795 Male, age 51, unknown 198.9
2502 Female, age 75, unknown 197.6
Periaquaductal grey, dorsal
nTPM: 194.0
1840 Male, age 53, unknown 197.4
2464 Female, age 72, unknown 195.9
2850 Male, age 76, both hemispheres 192.7
1831 Male, age 72, unknown 189.8
Periaquaductal grey, lateral
nTPM: 194.2
2272 Male, age 74, both hemispheres 195.1
2053 Male, age 18, unknown 194.6
2140 Male, age 76, both hemispheres 192.8
Pretectal area
nTPM: 198.2
1944 Female, age 72, unknown 203.1
1816 Male, age 51, unknown 202.5
2007 Male, age 72, unknown 202.1
1817 Female, age 42, unknown 200.2
1815 Male, age 53, unknown 199.3
2224 Female, age 72, unknown 198.1
2667 Female, age 75, unknown 197.5
2273 Male, age 74, both hemispheres 196.5
2825 Male, age 18, unknown 196.0
2407 Male, age 75, both hemispheres 193.1
2316 Male, age 76, right hemisphere 192.4
Red nucleus
nTPM: 199.4
2725 Female, age 75, unknown 205.3
1821 Female, age 72, unknown 205.0
2588 Male, age 74, left hemisphere 201.6
2503 Female, age 72, unknown 201.5
1954 Female, age 42, unknown 198.8
1865 Male, age 51, unknown 198.5
2769 Male, age 72, unknown 198.5
2227 Male, age 72, unknown 198.3
1904 Male, age 53, unknown 197.8
2584 Male, age 75, left hemisphere 196.4
2785 Male, age 18, unknown 196.0
2823 Male, age 76, right hemisphere 194.8
Substantia nigra
nTPM: 215.3
1916 Female, age 42, unknown 243.8
1851 Male, age 51, unknown 224.9
2241 Male, age 72, unknown 224.5
2699 Male, age 18, unknown 219.8
1941 Male, age 53, unknown 213.1
2409 Female, age 72, unknown 212.1
2665 Male, age 74, both hemispheres 212.0
1889 Female, age 72, unknown 206.5
2590 Female, age 75, unknown 201.1
2583 Male, age 75, right hemisphere 195.3
Superior colliculus
nTPM: 197.2
2668 Female, age 75, unknown 205.5
1796 Male, age 53, unknown 202.5
2587 Male, age 74, left hemisphere 198.8
2087 Female, age 72, unknown 197.8
2261 Male, age 18, unknown 197.0
1895 Male, age 76, right hemisphere 196.9
1839 Male, age 51, unknown 196.0
1913 Female, age 42, unknown 194.6
2664 Male, age 75, both hemispheres 192.5
1995 Male, age 72, unknown 190.6
Ventral tegmental area
nTPM: 208.3
1915 Female, age 42, unknown 219.2
2410 Female, age 72, unknown 216.7
2218 Male, age 76, both hemispheres 212.2
1942 Male, age 51, unknown 203.9
2223 Female, age 72, unknown 200.7
2021 Male, age 53, unknown 197.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 197.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 197.2
Samples: 139

Max nTPM: 370.4
Min nTPM: 105.5
Std nTPM: 55.8
Median nTPM: 185.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 370.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 357.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 343.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 319.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 317.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 311.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 310.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 304.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 301.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 287.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 286.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.5
FF:10158-103A5 76 years, female 69.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 79.6
Pig sample Sample description nTPM
Midbrain
nTPM: 75.4
Samples: 4

Max nTPM: 93.3
Min nTPM: 58.9
Sample A Female 93.3
Sample B Female 83.3
Sample C Male 58.9
Sample D Male 65.9
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 79.5
Min nTPM: 58.9
Sample B Female 74.8
Sample C Male 79.5
Sample D Male 58.9
Substantia nigra
nTPM: 79.6
Samples: 4

Max nTPM: 102.7
Min nTPM: 62.5
Sample A Female 102.7
Sample B Female 62.5
Sample C Male 87.4
Sample D Male 65.9
Superior colliculi
nTPM: 75.4
Samples: 4

Max nTPM: 95.9
Min nTPM: 56.4
Sample A Female 95.9
Sample B Female 56.4
Sample C Male 73.2
Sample D Male 76.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 136.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 144.5
Min nTPM: 130.5
Sample A Male 144.5
Sample B Male 132.9
Sample C Female 130.5
Sample D Female 138.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.3
2503 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 6.3
2504 Antisense, RP_040407_02_H10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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