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EFCAB14
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA:33.7 nTPM
GTEx:41.2 nTPM
FANTOM5:83.5 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:46.1 nTPM
Allen mouse:5.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.9
1870 Female, age 42, unknown 33.1
2586 Male, age 75, left hemisphere 30.9
1833 Male, age 53, unknown 29.9
2411 Female, age 72, unknown 29.8
1830 Male, age 51, unknown 29.3
2828 Female, age 72, unknown 29.3
2666 Male, age 74, left hemisphere 28.9
2019 Male, age 18, unknown 28.6
1827 Male, age 72, unknown 22.9
2219 Male, age 76, both hemispheres 16.6
Dorsal raphe nucleus
nTPM: 27.1
2750 Male, age 76, both hemispheres 30.9
2016 Female, age 72, unknown 29.6
1828 Male, age 53, unknown 28.0
2298 Female, age 72, unknown 24.6
2047 Male, age 72, unknown 22.6
Inferior colliculus
nTPM: 24.8
1890 Male, age 53, unknown 25.7
1848 Female, age 42, unknown 25.2
2097 Female, age 72, unknown 25.1
2849 Male, age 72, unknown 23.0
Median raphe nucleus
nTPM: 26.8
2220 Male, age 76, midline 26.8
Pedunculopontine tegmental nucleus
nTPM: 23.8
2334 Male, age 80, both hemispheres 27.1
2338 Male, age 61, both hemispheres 22.6
1921 Female, age 85, both hemispheres 21.6
Periaquaductal grey, anterior
nTPM: 24.2
2502 Female, age 75, unknown 29.5
1947 Male, age 18, unknown 22.8
1795 Male, age 51, unknown 20.3
Periaquaductal grey, dorsal
nTPM: 24.6
2850 Male, age 76, both hemispheres 26.5
2464 Female, age 72, unknown 25.9
1831 Male, age 72, unknown 24.1
1840 Male, age 53, unknown 22.0
Periaquaductal grey, lateral
nTPM: 21.6
2140 Male, age 76, both hemispheres 24.3
2053 Male, age 18, unknown 23.2
2272 Male, age 74, both hemispheres 17.5
Pretectal area
nTPM: 23.2
1815 Male, age 53, unknown 27.3
1817 Female, age 42, unknown 27.1
2316 Male, age 76, right hemisphere 25.4
2667 Female, age 75, unknown 24.1
2825 Male, age 18, unknown 23.5
2407 Male, age 75, both hemispheres 22.8
2224 Female, age 72, unknown 22.7
2007 Male, age 72, unknown 22.2
1816 Male, age 51, unknown 20.2
2273 Male, age 74, both hemispheres 20.1
1944 Female, age 72, unknown 19.3
Red nucleus
nTPM: 33.7
1821 Female, age 72, unknown 39.8
1904 Male, age 53, unknown 39.8
1954 Female, age 42, unknown 37.7
1865 Male, age 51, unknown 37.4
2503 Female, age 72, unknown 36.6
2227 Male, age 72, unknown 36.5
2769 Male, age 72, unknown 36.0
2823 Male, age 76, right hemisphere 32.9
2785 Male, age 18, unknown 31.3
2588 Male, age 74, left hemisphere 29.2
2725 Female, age 75, unknown 24.5
2584 Male, age 75, left hemisphere 23.1
Substantia nigra
nTPM: 26.5
2699 Male, age 18, unknown 34.0
1851 Male, age 51, unknown 30.4
1889 Female, age 72, unknown 27.7
2665 Male, age 74, both hemispheres 27.5
2241 Male, age 72, unknown 27.3
1916 Female, age 42, unknown 26.7
2590 Female, age 75, unknown 26.1
2583 Male, age 75, right hemisphere 23.7
1941 Male, age 53, unknown 21.6
2409 Female, age 72, unknown 20.2
Superior colliculus
nTPM: 26.6
1995 Male, age 72, unknown 34.6
1913 Female, age 42, unknown 32.5
2668 Female, age 75, unknown 27.9
2587 Male, age 74, left hemisphere 27.7
2664 Male, age 75, both hemispheres 27.4
1839 Male, age 51, unknown 27.2
1895 Male, age 76, right hemisphere 25.2
1796 Male, age 53, unknown 22.9
2087 Female, age 72, unknown 21.4
2261 Male, age 18, unknown 19.6
Ventral tegmental area
nTPM: 27.5
2410 Female, age 72, unknown 32.2
2223 Female, age 72, unknown 30.1
1915 Female, age 42, unknown 26.4
2021 Male, age 53, unknown 25.6
1942 Male, age 51, unknown 25.5
2218 Male, age 76, both hemispheres 25.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.2
Samples: 139

Max nTPM: 70.0
Min nTPM: 19.6
Std nTPM: 9.9
Median nTPM: 39.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 70.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 68.0
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 63.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 63.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 60.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 60.2
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 59.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 57.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 56.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 56.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 55.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.5
FF:10158-103A5 76 years, female 83.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 83.3
Min nTPM: 29.8
Sample A Female 83.3
Sample B Female 37.0
Sample C Male 32.5
Sample D Male 29.8
Periaqueductal gray
nTPM: 31.5
Samples: 3

Max nTPM: 36.7
Min nTPM: 26.1
Sample B Female 36.7
Sample C Male 26.1
Sample D Male 31.8
Substantia nigra
nTPM: 40.9
Samples: 4

Max nTPM: 56.7
Min nTPM: 31.5
Sample A Female 40.4
Sample B Female 31.5
Sample C Male 34.9
Sample D Male 56.7
Superior colliculi
nTPM: 35.4
Samples: 4

Max nTPM: 40.3
Min nTPM: 29.5
Sample A Female 37.9
Sample B Female 29.5
Sample C Male 33.7
Sample D Male 40.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.1
Samples: 4

Max nTPM: 49.0
Min nTPM: 42.4
Sample A Male 42.4
Sample B Male 46.1
Sample C Female 49.0
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.2
68844731 Antisense, RP_050222_02_C09, Mouse strain C57BL/6J (56 days, male) 5.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.