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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:498.5 nTPM
HPA:498.5 nTPM
GTEx:955.7 nTPM
FANTOM5:1434.3 Scaled Tags Per Million
Pig:1270.8 nTPM
Mouse:1167.1 nTPM
Allen mouse:3.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA044999
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 498.5
Sample id Sample description nTPM
Hippocampus
nTPM: 282.4
2621 Female, age 67, right hemisphere 485.5
1898 Male, age 80, left hemisphere 395.9
2148 Female, age 91, left hemisphere 286.9
1855 Male, age 76, left hemisphere 251.4
1911 Female, age 85, right hemisphere 189.2
2529 Female, age 94, left hemisphere 85.3
Dentate gyrus
nTPM: 329.8
1927 Female, age 91, both hemispheres 567.4
2530 Female, age 94, left hemisphere 434.2
2246 Female, age 85, both hemispheres 292.4
2010 Male, age 76, both hemispheres 284.8
2531 Female, age 67, both hemispheres 255.9
2528 Male, age 74, both hemispheres 144.1
Entorhinal gyrus
nTPM: 259.6
2613 Female, age 94, left hemisphere 461.6
2764 Male, age 80, right hemisphere 359.1
1938 Female, age 85, left hemisphere 285.9
1787 Male, age 76, left hemisphere 276.5
2686 Male, age 75, right hemisphere 174.8
2117 Female, age 91, right hemisphere 0.0
Hippocampus, CA1
nTPM: 460.6
2749 Male, age 80, left hemisphere 1142.5
2527 Male, age 74, both hemispheres 372.2
1873 Female, age 85, both hemispheres 359.3
2045 Male, age 76, both hemispheres 225.2
2082 Female, age 91, right hemisphere 203.9
Hippocampus, CA2
nTPM: 323.0
1892 Male, age 76, both hemispheres 567.4
1963 Male, age 80, left hemisphere 523.1
2249 Male, age 74, both hemispheres 285.2
2437 Female, age 94, left hemisphere 228.0
2113 Female, age 91, right hemisphere 204.0
1940 Female, age 85, left hemisphere 130.4
Hippocampus, CA3
nTPM: 396.5
2137 Male, age 80, left hemisphere 971.6
2620 Female, age 94, left hemisphere 421.2
2861 Female, age 67, both hemispheres 344.0
1867 Male, age 76, both hemispheres 340.9
2436 Male, age 74, both hemispheres 190.3
1891 Female, age 85, both hemispheres 111.1
Parahippocampal cortex
nTPM: 329.1
2245 Female, age 91, both hemispheres 645.2
2250 Female, age 67, right hemisphere 406.7
1850 Male, age 80, both hemispheres 383.5
2532 Female, age 72, left hemisphere 358.4
2622 Female, age 67, right hemisphere 337.8
1990 Female, age 91, right hemisphere 293.8
2693 Female, age 94, both hemispheres 280.7
1933 Female, age 85, both hemispheres 263.9
2018 Male, age 76, both hemispheres 167.7
2692 Male, age 74, both hemispheres 152.7
Perirhinal gyrus
nTPM: 498.5
1847 Female, age 91, left hemisphere 686.8
2521 Female, age 94, right hemisphere 551.8
1794 Male, age 80, right hemisphere 526.8
1841 Female, age 85, right hemisphere 429.2
2848 Male, age 76, right hemisphere 298.1
Subiculum
nTPM: 185.5
1901 Male, age 80, both hemispheres 381.4
1977 Female, age 85, both hemispheres 229.5
2619 Male, age 74, both hemispheres 185.2
2438 Female, age 94, left hemisphere 177.7
2042 Male, age 76, both hemispheres 133.6
2729 Female, age 91, right hemisphere 5.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 955.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 955.7
Samples: 197

Max nTPM: 2665.0
Min nTPM: 220.3
Std nTPM: 587.5
Median nTPM: 809.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 2665.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2475.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2340.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 2329.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 2325.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2307.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 2288.6
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 2233.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2217.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 2206.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2181.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1434.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1434.3
FF:10169-103B7 60 years, female 2113.6
FF:10153-102I9 76 years, female 754.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 1270.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 1224.1
Samples: 4

Max nTPM: 1507.0
Min nTPM: 990.9
Sample A Female 1507.0
Sample B Female 1335.4
Sample C Male 1063.0
Sample D Male 990.9
Entorhinal cortex
nTPM: 1265.5
Samples: 4

Max nTPM: 1369.8
Min nTPM: 1192.6
Sample A Female 1284.8
Sample B Female 1214.9
Sample C Male 1369.8
Sample D Male 1192.6
Subiculum
nTPM: 1163.9
Samples: 4

Max nTPM: 1578.7
Min nTPM: 912.0
Sample A Female 1578.7
Sample B Female 1020.5
Sample C Male 1144.4
Sample D Male 912.0
Ventral hippocampus
nTPM: 1270.8
Samples: 4

Max nTPM: 1520.7
Min nTPM: 878.1
Sample A Female 1308.3
Sample B Female 878.1
Sample C Male 1520.7
Sample D Male 1376.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1167.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 977.4
Samples: 4

Max nTPM: 1010.5
Min nTPM: 961.3
Sample A Male 961.3
Sample B Male 974.9
Sample C Female 962.8
Sample D Female 1010.5
Hippocampal formation
nTPM: 1167.1
Samples: 4

Max nTPM: 1302.7
Min nTPM: 1090.4
Sample A Male 1090.4
Sample B Male 1159.9
Sample C Female 1302.7
Sample D Female 1115.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.5
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.