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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.0 nTPM
HPA:77.0 nTPM
GTEx:504.2 nTPM
FANTOM5:171.5 Scaled Tags Per Million
Pig:919.0 nTPM
Mouse:612.6 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.8
2019 Male, age 18, unknown 16.7
2666 Male, age 74, left hemisphere 12.1
1827 Male, age 72, unknown 0.0
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 2.7
2220 Male, age 76, midline 2.7
Pedunculopontine tegmental nucleus
nTPM: 6.9
2334 Male, age 80, both hemispheres 20.9
1921 Female, age 85, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 0.0
1795 Male, age 51, unknown 0.0
1947 Male, age 18, unknown 0.0
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.0
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 77.0
1817 Female, age 42, unknown 209.5
1816 Male, age 51, unknown 192.6
1944 Female, age 72, unknown 190.7
2007 Male, age 72, unknown 186.1
1815 Male, age 53, unknown 68.6
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.3
2785 Male, age 18, unknown 4.2
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2584 Male, age 75, left hemisphere 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 32.3
1889 Female, age 72, unknown 122.9
1941 Male, age 53, unknown 89.1
1916 Female, age 42, unknown 59.7
2665 Male, age 74, both hemispheres 51.3
1851 Male, age 51, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 14.9
2087 Female, age 72, unknown 97.0
2668 Female, age 75, unknown 51.9
1796 Male, age 53, unknown 0.0
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 1.0
2218 Male, age 76, both hemispheres 6.0
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2223 Female, age 72, unknown 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 504.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 504.2
Samples: 139

Max nTPM: 1966.2
Min nTPM: 177.9
Std nTPM: 290.5
Median nTPM: 404.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1966.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1664.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1335.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1275.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1224.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1016.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1011.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 1006.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1003.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 982.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 943.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 171.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 171.5
FF:10158-103A5 76 years, female 171.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 919.0
Pig sample Sample description nTPM
Midbrain
nTPM: 833.8
Samples: 4

Max nTPM: 1225.8
Min nTPM: 556.5
Sample A Female 556.5
Sample B Female 579.0
Sample C Male 1225.8
Sample D Male 973.8
Periaqueductal gray
nTPM: 578.6
Samples: 3

Max nTPM: 701.6
Min nTPM: 483.9
Sample B Female 550.4
Sample C Male 701.6
Sample D Male 483.9
Substantia nigra
nTPM: 627.6
Samples: 4

Max nTPM: 875.2
Min nTPM: 351.4
Sample A Female 875.2
Sample B Female 450.3
Sample C Male 833.5
Sample D Male 351.4
Superior colliculi
nTPM: 919.0
Samples: 4

Max nTPM: 1161.9
Min nTPM: 466.1
Sample A Female 1096.0
Sample B Female 466.1
Sample C Male 1161.9
Sample D Male 952.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 612.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 612.6
Samples: 4

Max nTPM: 630.0
Min nTPM: 597.4
Sample A Male 630.0
Sample B Male 597.4
Sample C Female 605.4
Sample D Female 617.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
184 Antisense, RP_Baylor_102654, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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