ABOUTMENU
HELP
NEWS
U2AF1
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:39.9 nTPM
HPA:39.9 nTPM
GTEx:42.0 nTPM
FANTOM5:9.3 Scaled Tags Per Million
Mouse:115.6 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044833Antibody HPA052083
Glial cells HighMedium
Neuronal cells HighHigh





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.3
1857 Female, age 85, left hemisphere 43.1
2288 Male, age 75, left hemisphere 41.0
2290 Female, age 72, unknown 40.2
1781 Male, age 74, unknown 39.5
2846 Female, age 79, unknown 37.0
2289 Male, age 61, right hemisphere 36.5
2481 Female, age 94, left hemisphere 36.3
1854 Male, age 80, left hemisphere 33.1
Claustrum
nTPM: 36.4
2196 Female, age 79, unknown 40.0
2491 Male, age 75, both hemispheres 39.0
2292 Female, age 85, both hemispheres 38.7
1956 Male, age 74, unknown 37.3
2645 Female, age 72, unknown 37.1
2568 Male, age 61, both hemispheres 35.0
2392 Female, age 94, both hemispheres 34.7
2198 Male, age 80, both hemispheres 32.8
2284 Female, age 91, both hemispheres 32.5
Globus pallidus, externus
nTPM: 39.9
2772 Female, age 79, unknown 43.1
1996 Male, age 80, right hemisphere 42.6
2395 Male, age 75, both hemispheres 41.9
2567 Female, age 72, unknown 35.9
2646 Male, age 61, right hemisphere 35.8
Globus pallidus, internus
nTPM: 38.2
2037 Male, age 80, right hemisphere 43.5
2287 Male, age 75, right hemisphere 42.7
2483 Female, age 94, right hemisphere 41.7
1818 Male, age 74, unknown 37.1
2566 Female, age 72, unknown 36.1
2778 Female, age 91, both hemispheres 34.5
2111 Female, age 85, right hemisphere 32.1
Nucleus accumbens
nTPM: 37.7
2698 Female, age 72, unknown 41.8
1856 Female, age 91, right hemisphere 40.6
2391 Female, age 94, left hemisphere 40.0
1806 Female, age 85, left hemisphere 39.4
2824 Male, age 61, right hemisphere 36.1
1783 Male, age 74, unknown 35.6
2286 Male, age 75, left hemisphere 34.2
2732 Male, age 80, right hemisphere 33.4
Nucleus basalis of Meynert
nTPM: 35.8
2484 Female, age 94, left hemisphere 37.7
2569 Male, age 61, both hemispheres 36.9
2393 Male, age 80, right hemisphere 34.6
2821 Male, age 75, both hemispheres 33.7
Nucleus of the diagonal band
nTPM: 34.3
1979 Male, age 74, unknown 36.2
2029 Male, age 61, right hemisphere 35.5
2195 Female, age 85, both hemispheres 35.2
2775 Male, age 80, right hemisphere 32.7
1812 Female, age 91, both hemispheres 32.2
Olfactory tubercle
nTPM: 37.0
1846 Male, age 80, right hemisphere 40.4
1998 Female, age 91, both hemispheres 38.6
2487 Female, age 94, left hemisphere 36.2
2856 Male, age 75, right hemisphere 32.7
Putamen
nTPM: 35.5
2647 Male, age 75, left hemisphere 39.3
1829 Male, age 74, unknown 36.9
2466 Female, age 79, unknown 36.0
2489 Female, age 72, unknown 35.8
2482 Female, age 94, left hemisphere 35.7
1838 Male, age 80, right hemisphere 32.6
1937 Female, age 91, right hemisphere 32.4
Septal nuclei
nTPM: 36.2
2629 Female, age 94, right hemisphere 39.4
2009 Female, age 91, both hemispheres 38.3
2394 Male, age 61, left hemisphere 36.9
2031 Female, age 72, unknown 35.5
1960 Male, age 74, unknown 35.2
2059 Female, age 85, both hemispheres 34.8
2199 Male, age 80, right hemisphere 33.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.8
Samples: 246

Max nTPM: 114.5
Min nTPM: 11.6
Std nTPM: 12.3
Median nTPM: 38.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 114.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 95.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 79.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 75.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 70.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 70.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 65.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 65.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 63.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 61.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 58.9
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.7
Samples: 246

Max nTPM: 90.2
Min nTPM: 15.8
Std nTPM: 11.3
Median nTPM: 36.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 90.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 81.6
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 76.1
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 74.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 72.2
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 65.8
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 64.7
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 64.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 63.5
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 62.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 59.1
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 42.0
Samples: 205

Max nTPM: 134.4
Min nTPM: 15.2
Std nTPM: 14.4
Median nTPM: 40.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 134.4
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 126.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 97.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 80.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 72.0
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 70.4
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 67.3
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 65.9
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 65.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 63.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 62.8
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 9.1
FF:10164-103B2 76 years, female 9.1
Globus pallidus
Scaled Tags Per Million: 9.3
FF:10175-103C4 60 years, female 10.2
FF:10161-103A8 76 years, female 8.4
Nucleus accumbens
Scaled Tags Per Million: 2.4
FF:10037-101F1 23-56 years, mixed 2.4
Putamen
Scaled Tags Per Million: 2.7
FF:10176-103C5 60 years, female 2.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 115.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 113.3
Samples: 4

Max nTPM: 118.3
Min nTPM: 110.3
Sample A Male 111.3
Sample B Male 113.4
Sample C Female 118.3
Sample D Female 110.3
Septum
nTPM: 115.7
Samples: 4

Max nTPM: 121.3
Min nTPM: 104.6
Sample A Male 104.6
Sample B Male 121.3
Sample C Female 115.6
Sample D Female 121.1
Ventral forebrain
nTPM: 109.4
Samples: 4

Max nTPM: 121.3
Min nTPM: 96.3
Sample A Male 96.3
Sample B Male 108.3
Sample C Female 121.3
Sample D Female 111.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70194019 Antisense, RP_050517_01_D09, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
70194019 Antisense, RP_050517_01_D09, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.