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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.0 nTPM
HPA:40.0 nTPM
GTEx:36.6 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:13.3 nTPM
Mouse:36.7 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.8
2586 Male, age 75, left hemisphere 41.4
2411 Female, age 72, unknown 40.7
1827 Male, age 72, unknown 40.6
2828 Female, age 72, unknown 40.2
2666 Male, age 74, left hemisphere 40.0
2019 Male, age 18, unknown 39.3
1870 Female, age 42, unknown 39.1
2219 Male, age 76, both hemispheres 38.9
1830 Male, age 51, unknown 38.8
1833 Male, age 53, unknown 38.6
Dorsal raphe nucleus
nTPM: 38.8
2750 Male, age 76, both hemispheres 39.7
1828 Male, age 53, unknown 38.9
2047 Male, age 72, unknown 38.9
2298 Female, age 72, unknown 38.5
2016 Female, age 72, unknown 38.0
Inferior colliculus
nTPM: 39.4
1890 Male, age 53, unknown 39.7
2097 Female, age 72, unknown 39.3
1848 Female, age 42, unknown 39.2
2849 Male, age 72, unknown 39.1
Median raphe nucleus
nTPM: 39.9
2220 Male, age 76, midline 39.9
Pedunculopontine tegmental nucleus
nTPM: 38.8
2334 Male, age 80, both hemispheres 39.3
1921 Female, age 85, both hemispheres 39.1
2338 Male, age 61, both hemispheres 38.1
Periaquaductal grey, anterior
nTPM: 40.0
2502 Female, age 75, unknown 40.5
1795 Male, age 51, unknown 39.8
1947 Male, age 18, unknown 39.6
Periaquaductal grey, dorsal
nTPM: 39.4
2464 Female, age 72, unknown 40.1
2850 Male, age 76, both hemispheres 39.2
1831 Male, age 72, unknown 39.1
1840 Male, age 53, unknown 39.1
Periaquaductal grey, lateral
nTPM: 39.0
2140 Male, age 76, both hemispheres 40.1
2053 Male, age 18, unknown 38.6
2272 Male, age 74, both hemispheres 38.2
Pretectal area
nTPM: 39.6
1817 Female, age 42, unknown 40.6
1816 Male, age 51, unknown 40.5
2667 Female, age 75, unknown 40.3
1944 Female, age 72, unknown 40.2
2007 Male, age 72, unknown 40.1
2316 Male, age 76, right hemisphere 39.7
2825 Male, age 18, unknown 39.7
2273 Male, age 74, both hemispheres 39.5
1815 Male, age 53, unknown 39.2
2224 Female, age 72, unknown 38.6
2407 Male, age 75, both hemispheres 37.7
Red nucleus
nTPM: 39.9
2503 Female, age 72, unknown 40.6
2725 Female, age 75, unknown 40.5
1865 Male, age 51, unknown 40.2
1954 Female, age 42, unknown 40.1
2785 Male, age 18, unknown 40.1
2227 Male, age 72, unknown 40.0
1821 Female, age 72, unknown 39.8
1904 Male, age 53, unknown 39.8
2588 Male, age 74, left hemisphere 39.8
2769 Male, age 72, unknown 39.5
2584 Male, age 75, left hemisphere 39.4
2823 Male, age 76, right hemisphere 39.2
Substantia nigra
nTPM: 38.5
1916 Female, age 42, unknown 39.8
1941 Male, age 53, unknown 39.8
1889 Female, age 72, unknown 39.7
2699 Male, age 18, unknown 39.2
2583 Male, age 75, right hemisphere 38.8
1851 Male, age 51, unknown 38.6
2665 Male, age 74, both hemispheres 38.4
2590 Female, age 75, unknown 37.7
2241 Male, age 72, unknown 37.0
2409 Female, age 72, unknown 35.6
Superior colliculus
nTPM: 39.4
1796 Male, age 53, unknown 40.3
1995 Male, age 72, unknown 40.3
1895 Male, age 76, right hemisphere 39.6
2087 Female, age 72, unknown 39.4
2587 Male, age 74, left hemisphere 39.4
1839 Male, age 51, unknown 39.3
2261 Male, age 18, unknown 39.3
1913 Female, age 42, unknown 39.2
2664 Male, age 75, both hemispheres 38.5
2668 Female, age 75, unknown 38.4
Ventral tegmental area
nTPM: 39.5
1915 Female, age 42, unknown 40.2
2218 Male, age 76, both hemispheres 39.9
2223 Female, age 72, unknown 39.6
2410 Female, age 72, unknown 39.4
1942 Male, age 51, unknown 39.3
2021 Male, age 53, unknown 38.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.6
Samples: 139

Max nTPM: 75.6
Min nTPM: 20.7
Std nTPM: 8.8
Median nTPM: 35.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 75.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 64.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 55.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 53.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 52.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 50.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 48.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.3
Pig sample Sample description nTPM
Midbrain
nTPM: 13.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 12.2
Sample A Female 13.1
Sample B Female 13.8
Sample C Male 12.2
Sample D Male 12.9
Periaqueductal gray
nTPM: 13.3
Samples: 3

Max nTPM: 14.0
Min nTPM: 12.7
Sample B Female 14.0
Sample C Male 13.3
Sample D Male 12.7
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 11.1
Sample A Female 11.1
Sample B Female 13.4
Sample C Male 12.1
Sample D Male 13.4
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 13.2
Min nTPM: 11.5
Sample A Female 11.5
Sample B Female 13.2
Sample C Male 12.5
Sample D Male 13.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 42.3
Min nTPM: 32.3
Sample A Male 42.3
Sample B Male 33.5
Sample C Female 32.3
Sample D Female 38.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
74990523 Antisense, RP_060410_01_C06, Mouse strain C57BL/6J (56 days, male) 2.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.