ABOUTMENU
HELP
NEWS
RPS6KA4
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.7 nTPM
HPA:14.7 nTPM
GTEx:14.7 nTPM
FANTOM5:34.0 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:12.7 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.5
2586 Male, age 75, left hemisphere 19.2
2828 Female, age 72, unknown 15.7
2666 Male, age 74, left hemisphere 15.1
1827 Male, age 72, unknown 14.9
2219 Male, age 76, both hemispheres 14.5
2019 Male, age 18, unknown 14.3
1870 Female, age 42, unknown 14.0
1830 Male, age 51, unknown 12.8
1833 Male, age 53, unknown 12.7
2411 Female, age 72, unknown 11.9
Dorsal raphe nucleus
nTPM: 12.7
1828 Male, age 53, unknown 13.0
2750 Male, age 76, both hemispheres 12.9
2016 Female, age 72, unknown 12.5
2047 Male, age 72, unknown 12.5
2298 Female, age 72, unknown 12.5
Inferior colliculus
nTPM: 13.2
2849 Male, age 72, unknown 13.4
2097 Female, age 72, unknown 13.3
1848 Female, age 42, unknown 13.1
1890 Male, age 53, unknown 13.1
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Pedunculopontine tegmental nucleus
nTPM: 12.5
1921 Female, age 85, both hemispheres 13.5
2338 Male, age 61, both hemispheres 12.1
2334 Male, age 80, both hemispheres 11.9
Periaquaductal grey, anterior
nTPM: 14.3
1795 Male, age 51, unknown 14.9
2502 Female, age 75, unknown 14.3
1947 Male, age 18, unknown 13.6
Periaquaductal grey, dorsal
nTPM: 13.0
1831 Male, age 72, unknown 13.8
1840 Male, age 53, unknown 13.6
2464 Female, age 72, unknown 13.4
2850 Male, age 76, both hemispheres 11.2
Periaquaductal grey, lateral
nTPM: 12.4
2053 Male, age 18, unknown 13.2
2140 Male, age 76, both hemispheres 12.3
2272 Male, age 74, both hemispheres 11.7
Pretectal area
nTPM: 14.4
1816 Male, age 51, unknown 16.6
2007 Male, age 72, unknown 16.4
1817 Female, age 42, unknown 16.0
1944 Female, age 72, unknown 16.0
1815 Male, age 53, unknown 15.4
2407 Male, age 75, both hemispheres 15.4
2825 Male, age 18, unknown 13.4
2316 Male, age 76, right hemisphere 13.2
2667 Female, age 75, unknown 12.8
2224 Female, age 72, unknown 12.2
2273 Male, age 74, both hemispheres 11.1
Red nucleus
nTPM: 13.6
2584 Male, age 75, left hemisphere 15.9
2785 Male, age 18, unknown 15.0
2769 Male, age 72, unknown 14.1
2227 Male, age 72, unknown 13.7
2725 Female, age 75, unknown 13.7
2823 Male, age 76, right hemisphere 13.7
1865 Male, age 51, unknown 13.4
2588 Male, age 74, left hemisphere 13.4
1821 Female, age 72, unknown 12.9
1954 Female, age 42, unknown 12.7
1904 Male, age 53, unknown 12.6
2503 Female, age 72, unknown 12.2
Substantia nigra
nTPM: 14.1
2590 Female, age 75, unknown 16.2
2665 Male, age 74, both hemispheres 16.2
2583 Male, age 75, right hemisphere 15.7
1889 Female, age 72, unknown 14.8
1941 Male, age 53, unknown 14.0
2409 Female, age 72, unknown 13.9
1916 Female, age 42, unknown 13.5
1851 Male, age 51, unknown 13.2
2241 Male, age 72, unknown 12.0
2699 Male, age 18, unknown 11.9
Superior colliculus
nTPM: 14.7
2664 Male, age 75, both hemispheres 17.2
2261 Male, age 18, unknown 16.5
2087 Female, age 72, unknown 15.5
1796 Male, age 53, unknown 15.1
2587 Male, age 74, left hemisphere 14.5
1895 Male, age 76, right hemisphere 14.4
2668 Female, age 75, unknown 14.0
1913 Female, age 42, unknown 13.8
1839 Male, age 51, unknown 13.5
1995 Male, age 72, unknown 13.0
Ventral tegmental area
nTPM: 12.7
1942 Male, age 51, unknown 13.6
2021 Male, age 53, unknown 12.9
1915 Female, age 42, unknown 12.8
2223 Female, age 72, unknown 12.4
2218 Male, age 76, both hemispheres 12.2
2410 Female, age 72, unknown 12.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 21.4
Min nTPM: 8.2
Std nTPM: 2.7
Median nTPM: 14.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 20.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 20.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 20.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 19.8
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 19.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 19.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 19.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 18.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.0
FF:10158-103A5 76 years, female 34.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.2
Pig sample Sample description nTPM
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.1
Sample A Female 7.5
Sample B Female 7.0
Sample C Male 5.6
Sample D Male 5.1
Periaqueductal gray
nTPM: 5.7
Samples: 3

Max nTPM: 6.3
Min nTPM: 4.8
Sample B Female 5.9
Sample C Male 6.3
Sample D Male 4.8
Substantia nigra
nTPM: 7.2
Samples: 4

Max nTPM: 7.8
Min nTPM: 6.7
Sample A Female 7.8
Sample B Female 6.8
Sample C Male 7.5
Sample D Male 6.7
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.8
Sample A Female 6.2
Sample B Female 5.5
Sample C Male 4.8
Sample D Male 6.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 14.6
Min nTPM: 11.3
Sample A Male 14.6
Sample B Male 12.7
Sample C Female 11.3
Sample D Female 12.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
75826620 Antisense, RP_060601_01_C02, Mouse strain C57BL/6J (56 days, male) 0.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.