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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:189.7 nTPM
HPA:189.7 nTPM
GTEx:138.8 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:29.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 189.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.2
2828 Female, age 72, unknown 203.0
2586 Male, age 75, left hemisphere 186.2
1827 Male, age 72, unknown 175.3
1833 Male, age 53, unknown 161.0
2666 Male, age 74, left hemisphere 161.0
1870 Female, age 42, unknown 159.8
2411 Female, age 72, unknown 156.1
1830 Male, age 51, unknown 150.3
2019 Male, age 18, unknown 141.6
2219 Male, age 76, both hemispheres 137.7
Dorsal raphe nucleus
nTPM: 174.6
2016 Female, age 72, unknown 187.3
1828 Male, age 53, unknown 180.9
2298 Female, age 72, unknown 179.4
2047 Male, age 72, unknown 174.9
2750 Male, age 76, both hemispheres 150.5
Inferior colliculus
nTPM: 189.7
2849 Male, age 72, unknown 201.7
1848 Female, age 42, unknown 193.1
1890 Male, age 53, unknown 183.1
2097 Female, age 72, unknown 180.7
Median raphe nucleus
nTPM: 149.7
2220 Male, age 76, midline 149.7
Pedunculopontine tegmental nucleus
nTPM: 149.0
1921 Female, age 85, both hemispheres 154.9
2334 Male, age 80, both hemispheres 149.5
2338 Male, age 61, both hemispheres 142.5
Periaquaductal grey, anterior
nTPM: 173.2
1795 Male, age 51, unknown 182.4
2502 Female, age 75, unknown 178.1
1947 Male, age 18, unknown 159.3
Periaquaductal grey, dorsal
nTPM: 185.6
1840 Male, age 53, unknown 203.1
2464 Female, age 72, unknown 186.4
2850 Male, age 76, both hemispheres 184.1
1831 Male, age 72, unknown 168.6
Periaquaductal grey, lateral
nTPM: 186.5
2053 Male, age 18, unknown 197.4
2140 Male, age 76, both hemispheres 195.4
2272 Male, age 74, both hemispheres 166.8
Pretectal area
nTPM: 166.5
2667 Female, age 75, unknown 188.6
2825 Male, age 18, unknown 187.1
2273 Male, age 74, both hemispheres 171.3
1944 Female, age 72, unknown 170.3
1816 Male, age 51, unknown 168.5
2316 Male, age 76, right hemisphere 167.0
1817 Female, age 42, unknown 163.4
2224 Female, age 72, unknown 161.2
2407 Male, age 75, both hemispheres 156.6
1815 Male, age 53, unknown 156.3
2007 Male, age 72, unknown 140.9
Red nucleus
nTPM: 165.2
2227 Male, age 72, unknown 178.6
2769 Male, age 72, unknown 177.6
2503 Female, age 72, unknown 176.5
1954 Female, age 42, unknown 175.2
2588 Male, age 74, left hemisphere 173.3
2823 Male, age 76, right hemisphere 166.5
2725 Female, age 75, unknown 164.2
1821 Female, age 72, unknown 163.0
1904 Male, age 53, unknown 161.3
1865 Male, age 51, unknown 155.9
2584 Male, age 75, left hemisphere 149.6
2785 Male, age 18, unknown 140.9
Substantia nigra
nTPM: 166.3
2699 Male, age 18, unknown 211.1
1916 Female, age 42, unknown 179.0
1851 Male, age 51, unknown 168.5
2665 Male, age 74, both hemispheres 167.4
2409 Female, age 72, unknown 163.1
1889 Female, age 72, unknown 161.3
2241 Male, age 72, unknown 157.0
2583 Male, age 75, right hemisphere 155.5
1941 Male, age 53, unknown 151.5
2590 Female, age 75, unknown 149.1
Superior colliculus
nTPM: 168.1
2664 Male, age 75, both hemispheres 185.9
1796 Male, age 53, unknown 176.3
2087 Female, age 72, unknown 173.6
1995 Male, age 72, unknown 169.8
1839 Male, age 51, unknown 169.5
2261 Male, age 18, unknown 169.3
2587 Male, age 74, left hemisphere 161.1
2668 Female, age 75, unknown 160.5
1895 Male, age 76, right hemisphere 160.2
1913 Female, age 42, unknown 155.0
Ventral tegmental area
nTPM: 160.0
1915 Female, age 42, unknown 171.7
2021 Male, age 53, unknown 163.7
1942 Male, age 51, unknown 163.4
2410 Female, age 72, unknown 161.3
2218 Male, age 76, both hemispheres 154.3
2223 Female, age 72, unknown 145.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 138.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 138.8
Samples: 139

Max nTPM: 681.8
Min nTPM: 16.0
Std nTPM: 95.9
Median nTPM: 111.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 681.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 591.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 451.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 380.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 360.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 355.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 315.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 311.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 281.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 270.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 241.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.3
FF:10158-103A5 76 years, female 90.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.4
Pig sample Sample description nTPM
Midbrain
nTPM: 42.9
Samples: 4

Max nTPM: 60.7
Min nTPM: 33.3
Sample A Female 60.7
Sample B Female 40.0
Sample C Male 37.5
Sample D Male 33.3
Periaqueductal gray
nTPM: 40.9
Samples: 3

Max nTPM: 44.5
Min nTPM: 35.7
Sample B Female 44.5
Sample C Male 42.6
Sample D Male 35.7
Substantia nigra
nTPM: 43.4
Samples: 4

Max nTPM: 50.1
Min nTPM: 37.7
Sample A Female 41.9
Sample B Female 50.1
Sample C Male 37.7
Sample D Male 43.9
Superior colliculi
nTPM: 52.4
Samples: 4

Max nTPM: 83.3
Min nTPM: 37.0
Sample A Female 50.6
Sample B Female 83.3
Sample C Male 37.0
Sample D Male 38.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.5
Samples: 4

Max nTPM: 31.2
Min nTPM: 28.1
Sample A Male 31.2
Sample B Male 28.1
Sample C Female 28.8
Sample D Female 29.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
532728 Antisense, RP_040825_01_H01, Mouse strain C57BL/6J (56 days, male) 0.3
70919633 Antisense, RP_050713_01_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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