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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:108.5 nTPM
HPA:108.5 nTPM
GTEx:94.1 nTPM
FANTOM5:111.4 Scaled Tags Per Million
Pig:183.6 nTPM
Mouse:135.3 nTPM
Allen mouse:5.3 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 108.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 108.2
2846 Female, age 79, unknown 116.0
1857 Female, age 85, left hemisphere 112.4
1854 Male, age 80, left hemisphere 110.6
2290 Female, age 72, unknown 109.0
1781 Male, age 74, unknown 106.8
2288 Male, age 75, left hemisphere 105.1
2481 Female, age 94, left hemisphere 104.8
2289 Male, age 61, right hemisphere 101.0
Claustrum
nTPM: 100.9
2196 Female, age 79, unknown 103.7
2198 Male, age 80, both hemispheres 103.5
2392 Female, age 94, both hemispheres 102.4
1956 Male, age 74, unknown 101.7
2292 Female, age 85, both hemispheres 101.4
2568 Male, age 61, both hemispheres 99.9
2645 Female, age 72, unknown 99.3
2284 Female, age 91, both hemispheres 98.4
2491 Male, age 75, both hemispheres 97.3
Globus pallidus, externus
nTPM: 106.6
2395 Male, age 75, both hemispheres 111.9
1996 Male, age 80, right hemisphere 111.3
2772 Female, age 79, unknown 108.1
2567 Female, age 72, unknown 100.8
2646 Male, age 61, right hemisphere 100.8
Globus pallidus, internus
nTPM: 106.4
2037 Male, age 80, right hemisphere 110.8
2483 Female, age 94, right hemisphere 109.8
2287 Male, age 75, right hemisphere 108.5
1818 Male, age 74, unknown 107.9
2778 Female, age 91, both hemispheres 104.8
2566 Female, age 72, unknown 103.2
2111 Female, age 85, right hemisphere 99.5
Nucleus accumbens
nTPM: 107.2
1856 Female, age 91, right hemisphere 113.5
2698 Female, age 72, unknown 110.9
1806 Female, age 85, left hemisphere 110.6
1783 Male, age 74, unknown 108.7
2391 Female, age 94, left hemisphere 106.0
2286 Male, age 75, left hemisphere 104.2
2824 Male, age 61, right hemisphere 103.6
2732 Male, age 80, right hemisphere 100.4
Nucleus basalis of Meynert
nTPM: 105.7
2393 Male, age 80, right hemisphere 109.4
2821 Male, age 75, both hemispheres 105.2
2484 Female, age 94, left hemisphere 104.8
2569 Male, age 61, both hemispheres 103.2
Nucleus of the diagonal band
nTPM: 100.8
1812 Female, age 91, both hemispheres 103.9
2775 Male, age 80, right hemisphere 102.6
2195 Female, age 85, both hemispheres 99.6
2029 Male, age 61, right hemisphere 99.4
1979 Male, age 74, unknown 98.5
Olfactory tubercle
nTPM: 100.2
1846 Male, age 80, right hemisphere 103.7
1998 Female, age 91, both hemispheres 100.8
2856 Male, age 75, right hemisphere 98.8
2487 Female, age 94, left hemisphere 97.4
Putamen
nTPM: 108.5
2466 Female, age 79, unknown 112.2
1838 Male, age 80, right hemisphere 110.4
1937 Female, age 91, right hemisphere 109.8
2482 Female, age 94, left hemisphere 108.5
2489 Female, age 72, unknown 107.2
1829 Male, age 74, unknown 106.2
2647 Male, age 75, left hemisphere 105.3
Septal nuclei
nTPM: 100.4
2629 Female, age 94, right hemisphere 102.7
2031 Female, age 72, unknown 102.4
1960 Male, age 74, unknown 100.6
2009 Female, age 91, both hemispheres 99.8
2059 Female, age 85, both hemispheres 99.8
2199 Male, age 80, right hemisphere 99.6
2394 Male, age 61, left hemisphere 98.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 94.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 89.3
Samples: 246

Max nTPM: 154.6
Min nTPM: 55.8
Std nTPM: 14.7
Median nTPM: 87.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 154.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 144.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 130.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 129.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 125.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 124.3
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 121.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 120.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 120.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 118.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 118.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 92.4
Samples: 246

Max nTPM: 163.1
Min nTPM: 46.4
Std nTPM: 16.6
Median nTPM: 91.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 163.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 152.6
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 141.6
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 133.7
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 130.7
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 130.3
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 124.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 124.1
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 123.7
GTEX-TSE9-0011-R6A-SM-3DB7L 60-69 years, female 123.1
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 120.2
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Brain - Putamen (basal ganglia)
Average nTPM: 94.1
Samples: 205

Max nTPM: 158.1
Min nTPM: 65.0
Std nTPM: 15.8
Median nTPM: 91.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 158.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 151.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 143.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 137.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 134.5
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 130.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 130.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 130.3
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 127.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 123.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 123.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 111.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 111.4
FF:10164-103B2 76 years, female 111.4
Globus pallidus
Scaled Tags Per Million: 75.2
FF:10175-103C4 60 years, female 85.2
FF:10161-103A8 76 years, female 65.2
Nucleus accumbens
Scaled Tags Per Million: 108.9
FF:10037-101F1 23-56 years, mixed 108.9
Putamen
Scaled Tags Per Million: 103.3
FF:10176-103C5 60 years, female 103.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 183.6
Pig sample Sample description nTPM
Caudate
nTPM: 146.9
Samples: 4

Max nTPM: 162.9
Min nTPM: 132.1
Sample A Female 132.1
Sample B Female 162.9
Sample C Male 159.9
Sample D Male 132.5
Putamen
nTPM: 175.5
Samples: 4

Max nTPM: 199.9
Min nTPM: 134.2
Sample A Female 199.9
Sample B Female 134.2
Sample C Male 180.6
Sample D Male 187.4
Septum
nTPM: 183.6
Samples: 4

Max nTPM: 199.2
Min nTPM: 167.6
Sample A Female 199.2
Sample B Female 175.7
Sample C Male 191.8
Sample D Male 167.6
Ventral pallidum
nTPM: 166.2
Samples: 4

Max nTPM: 203.1
Min nTPM: 120.7
Sample A Female 120.7
Sample B Female 203.1
Sample C Male 160.3
Sample D Male 180.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 135.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 126.6
Samples: 4

Max nTPM: 135.7
Min nTPM: 115.3
Sample A Male 122.0
Sample B Male 115.3
Sample C Female 135.7
Sample D Female 133.5
Septum
nTPM: 135.3
Samples: 4

Max nTPM: 149.2
Min nTPM: 126.7
Sample A Male 126.7
Sample B Male 149.2
Sample C Female 132.9
Sample D Female 132.2
Ventral forebrain
nTPM: 134.9
Samples: 4

Max nTPM: 157.7
Min nTPM: 119.1
Sample A Male 119.1
Sample B Male 131.8
Sample C Female 157.7
Sample D Female 131.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.0
121097 Antisense, RP_040507_01_A03, Mouse strain C57BL/6J (56 days, male) 6.1
76081939 Antisense, RP_060626_01_B02, Mouse strain C57BL/6J (56 days, male) 4.6
77620333 Antisense, RP_070205_01_B07, Mouse strain C57BL/6J (56 days, male) 4.4
77869814 Antisense, RP_070205_01_B07, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 5.3
121097 Antisense, RP_040507_01_A03, Mouse strain C57BL/6J (56 days, male) 7.3
76081939 Antisense, RP_060626_01_B02, Mouse strain C57BL/6J (56 days, male) 4.8
77620333 Antisense, RP_070205_01_B07, Mouse strain C57BL/6J (56 days, male) 3.9
77869814 Antisense, RP_070205_01_B07, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.