Single cell type - CCDC191 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CCDC191
Gene descriptionⁱ Full gene name according to HGNC.	Coiled-coil domain containing 191
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	3

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Ciliated cells - Cilium organization (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Respiratory ciliated cells, Spermatocytes, Endometrial ciliated cells, Rod photoreceptor cells, Cone photoreceptor cells)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in many
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Respiratory ciliated cells, Spermatocytes, Endometrial ciliated cells, Rod photoreceptor cells, Cone photoreceptor cells)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

CCDC191 is part of cluster 49 Ciliated cells - Cilium organization with confidenceⁱ 1
457 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
DRC3	Dynein regulatory complex subunit 3	0.8028	49
PRR29	Proline rich 29	0.7812	49
NEK5	NIMA related kinase 5	0.7546	49
CFAP57	Cilia and flagella associated protein 57	0.7501	49
CFAP157	Cilia and flagella associated protein 157	0.7467	49
CEP126	Centrosomal protein 126	0.7173	49
AGBL2	ATP/GTP binding protein like 2	0.7169	49
CFAP43	Cilia and flagella associated protein 43	0.7133	49
LRRC74B	Leucine rich repeat containing 74B	0.7076	49
CABCOCO1	Ciliary associated calcium binding coiled-coil 1	0.7058	49
BBOF1	Basal body orientation factor 1	0.6964	49
CFAP97D2	CFAP97 domain containing 2	0.6850	49
CFAP70	Cilia and flagella associated protein 70	0.6829	49
DNAH12	Dynein axonemal heavy chain 12	0.6786	49
DEUP1	Deuterosome assembly protein 1	0.6761	49

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	5.2 nTPM
Breast	5.7 nTPM
Adipose tissue	4.7 nTPM

Alveolar cells type 1	12.8 nTPM
Lung	12.8 nTPM

Alveolar cells type 2	14.4 nTPM
Lung	14.4 nTPM

Astrocytes	0.0 nTPM
Brain	0.0 nTPM

B-cells	20.0 nTPM
PBMC	38.6 nTPM
Bone marrow	36.8 nTPM
Adipose tissue	35.1 nTPM
Stomach	24.5 nTPM
Lymph node	16.7 nTPM
Spleen	16.0 nTPM
Breast	16.0 nTPM
Kidney	9.5 nTPM
Liver	6.7 nTPM
Colon	0.0 nTPM

Dendritic cells	7.9 nTPM
PBMC	16.0 nTPM
Breast	4.7 nTPM
Adipose tissue	3.1 nTPM

Endothelial cells	3.7 nTPM
Ovary	7.5 nTPM
Lung	6.2 nTPM
Endometrium	5.7 nTPM
Liver	5.5 nTPM
Testis	5.1 nTPM
Breast	5.1 nTPM
Skeletal muscle	4.4 nTPM
Eye	4.1 nTPM
Esophagus	3.7 nTPM
Placenta	3.4 nTPM
Prostate	1.6 nTPM
Heart muscle	0.0 nTPM
Pancreas	0.0 nTPM
Skin	0.0 nTPM

Fibroblasts	4.0 nTPM
Lung	7.8 nTPM
Skeletal muscle	6.8 nTPM
Breast	6.3 nTPM
Esophagus	5.7 nTPM
Adipose tissue	5.1 nTPM
Stomach	4.4 nTPM
Ovary	3.5 nTPM
Prostate	2.4 nTPM
Placenta	2.0 nTPM
Heart muscle	0.0 nTPM
Skin	0.0 nTPM

Intestinal goblet cells	2.3 nTPM
Rectum	4.7 nTPM
Small intestine	2.1 nTPM
Colon	0.0 nTPM

Macrophages	3.0 nTPM
Lung	10.4 nTPM
Spleen	6.2 nTPM
Endometrium	4.8 nTPM
Breast	4.1 nTPM
Testis	4.0 nTPM
Ovary	3.7 nTPM
Skeletal muscle	3.3 nTPM
Adipose tissue	3.3 nTPM
Bone marrow	2.5 nTPM
Esophagus	1.6 nTPM
Kidney	1.5 nTPM
Prostate	0.0 nTPM
PBMC	0.0 nTPM
Pancreas	0.0 nTPM
Stomach	0.0 nTPM

Paneth cells	1.0 nTPM
Rectum	3.0 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM

Plasma cells	3.0 nTPM
Bone marrow	6.6 nTPM
Adipose tissue	5.2 nTPM
Stomach	2.3 nTPM
Spleen	1.0 nTPM
Esophagus	0.0 nTPM

Respiratory ciliated cells	104.2 nTPM
Lung	208.4 nTPM
Bronchus	0.0 nTPM

Smooth muscle cells	3.5 nTPM
Skeletal muscle	8.2 nTPM
Adipose tissue	7.2 nTPM
Esophagus	6.2 nTPM
Ovary	5.3 nTPM
Endometrium	4.8 nTPM
Breast	3.6 nTPM
Prostate	2.2 nTPM
Pancreas	0.9 nTPM
Heart muscle	0.0 nTPM
Skin	0.0 nTPM
Bronchus	0.0 nTPM

T-cells	4.5 nTPM
Lung	13.6 nTPM
Bone marrow	7.5 nTPM
PBMC	7.0 nTPM
Lymph node	7.0 nTPM
Skeletal muscle	6.7 nTPM
Ovary	6.7 nTPM
Endometrium	5.7 nTPM
Stomach	5.5 nTPM
Adipose tissue	5.1 nTPM
Spleen	4.2 nTPM
Breast	4.0 nTPM
Kidney	2.7 nTPM
Liver	1.4 nTPM
Colon	0.0 nTPM
Prostate	0.0 nTPM
Skin	0.0 nTPM
Esophagus	0.0 nTPM

Collecting duct cells	12.9 nTPM
Kidney	12.9 nTPM

Cytotrophoblasts	1.8 nTPM
Placenta	1.8 nTPM

Distal tubular cells	13.7 nTPM
Kidney	13.7 nTPM

Early spermatids	27.1 nTPM
Testis	27.1 nTPM

Undifferentiated cells	2.7 nTPM
Rectum	4.7 nTPM
Small intestine	3.5 nTPM
Colon	0.0 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC