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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.9 nTPM
HPA:27.9 nTPM
GTEx:13.4 nTPM
FANTOM5:62.3 Scaled Tags Per Million
Pig:12.2 nTPM
Mouse:9.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
1870 Female, age 42, unknown 17.7
2019 Male, age 18, unknown 17.5
2666 Male, age 74, left hemisphere 17.1
1830 Male, age 51, unknown 16.4
1833 Male, age 53, unknown 16.4
2411 Female, age 72, unknown 16.2
2828 Female, age 72, unknown 15.5
2586 Male, age 75, left hemisphere 15.1
1827 Male, age 72, unknown 14.8
2219 Male, age 76, both hemispheres 12.6
Dorsal raphe nucleus
nTPM: 16.6
2750 Male, age 76, both hemispheres 17.8
2016 Female, age 72, unknown 17.7
2298 Female, age 72, unknown 16.7
1828 Male, age 53, unknown 16.1
2047 Male, age 72, unknown 14.9
Inferior colliculus
nTPM: 15.1
2097 Female, age 72, unknown 15.8
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 15.1
2849 Male, age 72, unknown 13.7
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Pedunculopontine tegmental nucleus
nTPM: 17.2
2338 Male, age 61, both hemispheres 19.8
2334 Male, age 80, both hemispheres 16.8
1921 Female, age 85, both hemispheres 14.9
Periaquaductal grey, anterior
nTPM: 15.4
1795 Male, age 51, unknown 16.3
1947 Male, age 18, unknown 15.2
2502 Female, age 75, unknown 14.6
Periaquaductal grey, dorsal
nTPM: 16.8
2850 Male, age 76, both hemispheres 21.2
1831 Male, age 72, unknown 15.9
2464 Female, age 72, unknown 15.2
1840 Male, age 53, unknown 14.9
Periaquaductal grey, lateral
nTPM: 16.5
2140 Male, age 76, both hemispheres 17.0
2272 Male, age 74, both hemispheres 16.4
2053 Male, age 18, unknown 16.1
Pretectal area
nTPM: 15.6
1817 Female, age 42, unknown 18.4
1815 Male, age 53, unknown 16.7
2007 Male, age 72, unknown 16.6
2224 Female, age 72, unknown 16.3
2316 Male, age 76, right hemisphere 15.4
2273 Male, age 74, both hemispheres 15.3
1944 Female, age 72, unknown 15.2
1816 Male, age 51, unknown 15.1
2667 Female, age 75, unknown 15.0
2825 Male, age 18, unknown 13.8
2407 Male, age 75, both hemispheres 13.4
Red nucleus
nTPM: 17.6
1865 Male, age 51, unknown 20.0
1954 Female, age 42, unknown 19.8
1821 Female, age 72, unknown 19.1
2503 Female, age 72, unknown 18.4
1904 Male, age 53, unknown 18.2
2785 Male, age 18, unknown 18.1
2227 Male, age 72, unknown 17.9
2769 Male, age 72, unknown 17.6
2725 Female, age 75, unknown 17.1
2588 Male, age 74, left hemisphere 17.0
2823 Male, age 76, right hemisphere 15.2
2584 Male, age 75, left hemisphere 12.8
Substantia nigra
nTPM: 15.9
2409 Female, age 72, unknown 18.4
2590 Female, age 75, unknown 16.9
1889 Female, age 72, unknown 16.8
2665 Male, age 74, both hemispheres 16.8
2699 Male, age 18, unknown 16.2
1851 Male, age 51, unknown 15.7
2241 Male, age 72, unknown 15.4
1916 Female, age 42, unknown 15.1
1941 Male, age 53, unknown 14.0
2583 Male, age 75, right hemisphere 13.8
Superior colliculus
nTPM: 16.0
1995 Male, age 72, unknown 20.3
1913 Female, age 42, unknown 19.9
1796 Male, age 53, unknown 17.6
2587 Male, age 74, left hemisphere 16.5
2668 Female, age 75, unknown 16.2
2261 Male, age 18, unknown 15.7
1839 Male, age 51, unknown 14.7
2087 Female, age 72, unknown 14.6
1895 Male, age 76, right hemisphere 13.2
2664 Male, age 75, both hemispheres 11.3
Ventral tegmental area
nTPM: 16.0
2223 Female, age 72, unknown 17.5
2410 Female, age 72, unknown 17.5
2218 Male, age 76, both hemispheres 16.8
2021 Male, age 53, unknown 15.1
1915 Female, age 42, unknown 15.0
1942 Male, age 51, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.4
Samples: 139

Max nTPM: 44.7
Min nTPM: 4.0
Std nTPM: 6.7
Median nTPM: 12.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 37.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 36.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.2
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 29.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 29.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 28.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 24.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 24.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 23.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 62.3
FF:10158-103A5 76 years, female 62.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.2
Pig sample Sample description nTPM
Midbrain
nTPM: 12.2
Samples: 4

Max nTPM: 14.3
Min nTPM: 10.4
Sample A Female 14.3
Sample B Female 13.6
Sample C Male 10.4
Sample D Male 10.6
Periaqueductal gray
nTPM: 11.7
Samples: 3

Max nTPM: 12.6
Min nTPM: 9.9
Sample B Female 12.6
Sample C Male 12.6
Sample D Male 9.9
Substantia nigra
nTPM: 11.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 11.1
Sample A Female 11.7
Sample B Female 12.1
Sample C Male 11.1
Sample D Male 12.3
Superior colliculi
nTPM: 11.9
Samples: 4

Max nTPM: 13.1
Min nTPM: 10.3
Sample A Female 13.1
Sample B Female 12.2
Sample C Male 11.9
Sample D Male 10.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 10.6
Min nTPM: 8.9
Sample A Male 10.6
Sample B Male 10.2
Sample C Female 9.1
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69981007 Antisense, RP_050512_04_E01, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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