ABOUTMENU
HELP
NEWS
TIPARP
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.3 nTPM
HPA:19.3 nTPM
GTEx:14.3 nTPM
FANTOM5:96.6 Scaled Tags Per Million
Pig:14.1 nTPM
Mouse:14.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 19.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 19.3
2481 Female, age 94, left hemisphere 24.2
1781 Male, age 74, unknown 23.3
1854 Male, age 80, left hemisphere 20.7
2289 Male, age 61, right hemisphere 20.2
1857 Female, age 85, left hemisphere 19.5
2288 Male, age 75, left hemisphere 16.3
2290 Female, age 72, unknown 15.2
2846 Female, age 79, unknown 15.2
Claustrum
nTPM: 14.6
2292 Female, age 85, both hemispheres 17.9
2196 Female, age 79, unknown 16.8
1956 Male, age 74, unknown 16.7
2198 Male, age 80, both hemispheres 15.6
2645 Female, age 72, unknown 13.3
2284 Female, age 91, both hemispheres 13.0
2491 Male, age 75, both hemispheres 13.0
2392 Female, age 94, both hemispheres 12.9
2568 Male, age 61, both hemispheres 11.9
Globus pallidus, externus
nTPM: 17.7
1996 Male, age 80, right hemisphere 21.6
2772 Female, age 79, unknown 18.9
2646 Male, age 61, right hemisphere 16.6
2567 Female, age 72, unknown 16.4
2395 Male, age 75, both hemispheres 15.2
Globus pallidus, internus
nTPM: 18.7
2037 Male, age 80, right hemisphere 20.8
2111 Female, age 85, right hemisphere 20.4
2778 Female, age 91, both hemispheres 20.4
2287 Male, age 75, right hemisphere 17.8
1818 Male, age 74, unknown 17.7
2566 Female, age 72, unknown 17.2
2483 Female, age 94, right hemisphere 16.6
Nucleus accumbens
nTPM: 17.1
1806 Female, age 85, left hemisphere 18.9
2732 Male, age 80, right hemisphere 18.7
2391 Female, age 94, left hemisphere 18.6
2286 Male, age 75, left hemisphere 18.3
2698 Female, age 72, unknown 16.7
1783 Male, age 74, unknown 15.4
2824 Male, age 61, right hemisphere 15.4
1856 Female, age 91, right hemisphere 14.8
Nucleus basalis of Meynert
nTPM: 15.8
2569 Male, age 61, both hemispheres 17.3
2393 Male, age 80, right hemisphere 16.5
2484 Female, age 94, left hemisphere 15.5
2821 Male, age 75, both hemispheres 13.8
Nucleus of the diagonal band
nTPM: 15.3
1812 Female, age 91, both hemispheres 16.7
1979 Male, age 74, unknown 16.2
2195 Female, age 85, both hemispheres 15.7
2775 Male, age 80, right hemisphere 15.0
2029 Male, age 61, right hemisphere 12.7
Olfactory tubercle
nTPM: 14.8
2856 Male, age 75, right hemisphere 17.1
1846 Male, age 80, right hemisphere 15.3
2487 Female, age 94, left hemisphere 13.6
1998 Female, age 91, both hemispheres 13.1
Putamen
nTPM: 15.1
2482 Female, age 94, left hemisphere 19.3
1937 Female, age 91, right hemisphere 16.5
1838 Male, age 80, right hemisphere 14.7
1829 Male, age 74, unknown 14.6
2489 Female, age 72, unknown 14.0
2647 Male, age 75, left hemisphere 13.5
2466 Female, age 79, unknown 13.4
Septal nuclei
nTPM: 16.6
2199 Male, age 80, right hemisphere 18.5
2059 Female, age 85, both hemispheres 17.7
2394 Male, age 61, left hemisphere 17.6
2629 Female, age 94, right hemisphere 17.5
2031 Female, age 72, unknown 15.4
2009 Female, age 91, both hemispheres 14.8
1960 Male, age 74, unknown 14.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 14.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.3
Samples: 246

Max nTPM: 66.1
Min nTPM: 4.1
Std nTPM: 7.8
Median nTPM: 12.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 66.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 42.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 41.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 37.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 36.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 35.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 35.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 34.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 34.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 33.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 31.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.1
Samples: 246

Max nTPM: 59.5
Min nTPM: 3.8
Std nTPM: 8.2
Median nTPM: 10.1
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 59.5
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 49.5
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 44.4
GTEX-1I19N-0011-R6b-SM-CY8GC 70-79 years, male 44.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 37.4
GTEX-P44G-0011-R6A-SM-2XCD3 30-39 years, male 37.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 36.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 35.8
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 33.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 33.0
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 32.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 12.8
Samples: 205

Max nTPM: 42.5
Min nTPM: 3.3
Std nTPM: 6.2
Median nTPM: 11.4
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 42.5
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 40.5
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 33.6
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 31.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 30.0
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 29.2
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 29.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 27.5
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 26.2
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 25.6
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 24.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.3
FF:10164-103B2 76 years, female 52.3
Globus pallidus
Scaled Tags Per Million: 96.6
FF:10175-103C4 60 years, female 145.2
FF:10161-103A8 76 years, female 48.0
Nucleus accumbens
Scaled Tags Per Million: 30.5
FF:10037-101F1 23-56 years, mixed 30.5
Putamen
Scaled Tags Per Million: 61.8
FF:10176-103C5 60 years, female 61.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 14.1
Pig sample Sample description nTPM
Caudate
nTPM: 13.5
Samples: 4

Max nTPM: 14.7
Min nTPM: 12.4
Sample A Female 12.4
Sample B Female 12.9
Sample C Male 14.7
Sample D Male 13.9
Putamen
nTPM: 14.1
Samples: 4

Max nTPM: 16.9
Min nTPM: 12.7
Sample A Female 12.8
Sample B Female 12.7
Sample C Male 16.9
Sample D Male 14.0
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 15.3
Min nTPM: 11.4
Sample A Female 12.3
Sample B Female 11.4
Sample C Male 12.9
Sample D Male 15.3
Ventral pallidum
nTPM: 12.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 11.5
Sample A Female 13.4
Sample B Female 11.5
Sample C Male 11.7
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 13.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.5
Sample A Male 16.5
Sample B Male 14.9
Sample C Female 10.5
Sample D Female 12.7
Septum
nTPM: 14.5
Samples: 4

Max nTPM: 18.5
Min nTPM: 11.5
Sample A Male 11.5
Sample B Male 18.5
Sample C Female 13.1
Sample D Female 15.0
Ventral forebrain
nTPM: 10.9
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.7
Sample A Male 10.4
Sample B Male 12.4
Sample C Female 8.7
Sample D Female 12.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69981007 Antisense, RP_050512_04_E01, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.2
69981007 Antisense, RP_050512_04_E01, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.