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CCNL1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.9 nTPM
HPA:12.9 nTPM
GTEx:13.1 nTPM
FANTOM5:147.4 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:5.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 12.4
2290 Female, age 72, unknown 13.5
1781 Male, age 74, unknown 13.0
2481 Female, age 94, left hemisphere 12.4
1854 Male, age 80, left hemisphere 12.3
1857 Female, age 85, left hemisphere 12.3
2288 Male, age 75, left hemisphere 12.1
2846 Female, age 79, unknown 11.9
2289 Male, age 61, right hemisphere 11.6
Claustrum
nTPM: 12.2
2292 Female, age 85, both hemispheres 13.4
2284 Female, age 91, both hemispheres 13.1
2645 Female, age 72, unknown 13.1
2196 Female, age 79, unknown 12.8
1956 Male, age 74, unknown 12.0
2491 Male, age 75, both hemispheres 11.5
2392 Female, age 94, both hemispheres 11.4
2568 Male, age 61, both hemispheres 11.3
2198 Male, age 80, both hemispheres 10.9
Globus pallidus, externus
nTPM: 12.9
1996 Male, age 80, right hemisphere 15.5
2567 Female, age 72, unknown 12.8
2772 Female, age 79, unknown 12.8
2646 Male, age 61, right hemisphere 12.1
2395 Male, age 75, both hemispheres 11.5
Globus pallidus, internus
nTPM: 12.7
2037 Male, age 80, right hemisphere 13.7
2778 Female, age 91, both hemispheres 13.7
2111 Female, age 85, right hemisphere 12.8
2287 Male, age 75, right hemisphere 12.8
2566 Female, age 72, unknown 12.2
1818 Male, age 74, unknown 11.9
2483 Female, age 94, right hemisphere 11.9
Nucleus accumbens
nTPM: 12.6
1806 Female, age 85, left hemisphere 14.7
2824 Male, age 61, right hemisphere 13.6
1783 Male, age 74, unknown 12.9
2391 Female, age 94, left hemisphere 12.4
2286 Male, age 75, left hemisphere 12.1
2698 Female, age 72, unknown 11.8
2732 Male, age 80, right hemisphere 11.8
1856 Female, age 91, right hemisphere 11.3
Nucleus basalis of Meynert
nTPM: 12.3
2821 Male, age 75, both hemispheres 12.9
2484 Female, age 94, left hemisphere 12.7
2393 Male, age 80, right hemisphere 11.9
2569 Male, age 61, both hemispheres 11.8
Nucleus of the diagonal band
nTPM: 11.5
1979 Male, age 74, unknown 13.4
2195 Female, age 85, both hemispheres 11.6
2029 Male, age 61, right hemisphere 11.2
2775 Male, age 80, right hemisphere 10.9
1812 Female, age 91, both hemispheres 10.6
Olfactory tubercle
nTPM: 11.9
1998 Female, age 91, both hemispheres 12.4
2856 Male, age 75, right hemisphere 12.4
1846 Male, age 80, right hemisphere 11.6
2487 Female, age 94, left hemisphere 11.3
Putamen
nTPM: 12.4
1838 Male, age 80, right hemisphere 12.9
2482 Female, age 94, left hemisphere 12.8
2489 Female, age 72, unknown 12.7
2647 Male, age 75, left hemisphere 12.4
1829 Male, age 74, unknown 12.2
1937 Female, age 91, right hemisphere 12.1
2466 Female, age 79, unknown 12.1
Septal nuclei
nTPM: 11.7
1960 Male, age 74, unknown 12.5
2629 Female, age 94, right hemisphere 12.2
2394 Male, age 61, left hemisphere 12.0
2059 Female, age 85, both hemispheres 11.5
2031 Female, age 72, unknown 11.4
2199 Male, age 80, right hemisphere 11.2
2009 Female, age 91, both hemispheres 10.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.1
Samples: 246

Max nTPM: 50.8
Min nTPM: 4.2
Std nTPM: 5.0
Median nTPM: 11.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 50.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 30.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 29.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 29.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 26.1
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 25.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 22.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 21.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 21.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 21.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.8
Samples: 246

Max nTPM: 78.7
Min nTPM: 4.6
Std nTPM: 6.7
Median nTPM: 10.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 78.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 38.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 34.4
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 31.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 31.0
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 30.0
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 27.8
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 25.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 24.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 24.1
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 24.1
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Brain - Putamen (basal ganglia)
Average nTPM: 13.1
Samples: 205

Max nTPM: 29.3
Min nTPM: 0.7
Std nTPM: 4.8
Median nTPM: 12.3
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 29.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 29.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 27.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 27.8
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 26.2
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 25.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 25.3
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 23.3
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 23.1
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 22.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 22.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 147.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.0
FF:10164-103B2 76 years, female 70.0
Globus pallidus
Scaled Tags Per Million: 147.4
FF:10175-103C4 60 years, female 177.6
FF:10161-103A8 76 years, female 117.2
Nucleus accumbens
Scaled Tags Per Million: 57.5
FF:10037-101F1 23-56 years, mixed 57.5
Putamen
Scaled Tags Per Million: 97.4
FF:10176-103C5 60 years, female 97.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Caudate
nTPM: 26.0
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.7
Sample A Female 28.2
Sample B Female 23.7
Sample C Male 26.1
Sample D Male 25.9
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 29.6
Min nTPM: 25.5
Sample A Female 29.5
Sample B Female 26.1
Sample C Male 29.6
Sample D Male 25.5
Septum
nTPM: 29.6
Samples: 4

Max nTPM: 30.8
Min nTPM: 27.2
Sample A Female 29.5
Sample B Female 27.2
Sample C Male 30.8
Sample D Male 30.8
Ventral pallidum
nTPM: 26.1
Samples: 4

Max nTPM: 27.0
Min nTPM: 24.6
Sample A Female 26.0
Sample B Female 26.8
Sample C Male 24.6
Sample D Male 27.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.7
Samples: 4

Max nTPM: 4.0
Min nTPM: 3.3
Sample A Male 4.0
Sample B Male 3.6
Sample C Female 4.0
Sample D Female 3.3
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.1
Sample A Male 4.1
Sample B Male 7.6
Sample C Female 4.1
Sample D Female 4.4
Ventral forebrain
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.5
Sample A Male 5.7
Sample B Male 5.5
Sample C Female 4.8
Sample D Female 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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