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SLBP
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:36.2 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Mouse:24.0 nTPM
Allen mouse:0.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA019254
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.0
2481 Female, age 94, left hemisphere 44.2
1857 Female, age 85, left hemisphere 40.2
2289 Male, age 61, right hemisphere 39.1
1781 Male, age 74, unknown 39.0
2290 Female, age 72, unknown 38.2
2846 Female, age 79, unknown 37.7
1854 Male, age 80, left hemisphere 36.7
2288 Male, age 75, left hemisphere 36.7
Claustrum
nTPM: 36.9
2491 Male, age 75, both hemispheres 38.8
1956 Male, age 74, unknown 38.4
2198 Male, age 80, both hemispheres 38.3
2196 Female, age 79, unknown 37.3
2284 Female, age 91, both hemispheres 36.9
2292 Female, age 85, both hemispheres 36.9
2568 Male, age 61, both hemispheres 35.6
2392 Female, age 94, both hemispheres 35.4
2645 Female, age 72, unknown 34.9
Globus pallidus, externus
nTPM: 34.8
2772 Female, age 79, unknown 37.3
2395 Male, age 75, both hemispheres 36.1
2646 Male, age 61, right hemisphere 35.4
1996 Male, age 80, right hemisphere 34.1
2567 Female, age 72, unknown 31.0
Globus pallidus, internus
nTPM: 35.3
2483 Female, age 94, right hemisphere 41.6
2287 Male, age 75, right hemisphere 36.5
2778 Female, age 91, both hemispheres 36.4
2037 Male, age 80, right hemisphere 34.6
1818 Male, age 74, unknown 33.6
2566 Female, age 72, unknown 32.5
2111 Female, age 85, right hemisphere 31.7
Nucleus accumbens
nTPM: 37.5
1856 Female, age 91, right hemisphere 40.4
2391 Female, age 94, left hemisphere 39.5
1806 Female, age 85, left hemisphere 39.1
1783 Male, age 74, unknown 39.0
2698 Female, age 72, unknown 37.9
2286 Male, age 75, left hemisphere 36.3
2732 Male, age 80, right hemisphere 34.2
2824 Male, age 61, right hemisphere 33.5
Nucleus basalis of Meynert
nTPM: 35.5
2484 Female, age 94, left hemisphere 37.5
2569 Male, age 61, both hemispheres 35.4
2821 Male, age 75, both hemispheres 35.0
2393 Male, age 80, right hemisphere 34.1
Nucleus of the diagonal band
nTPM: 40.2
1812 Female, age 91, both hemispheres 43.0
2195 Female, age 85, both hemispheres 41.9
2775 Male, age 80, right hemisphere 40.9
1979 Male, age 74, unknown 37.9
2029 Male, age 61, right hemisphere 37.1
Olfactory tubercle
nTPM: 37.9
1998 Female, age 91, both hemispheres 41.4
1846 Male, age 80, right hemisphere 39.9
2856 Male, age 75, right hemisphere 36.2
2487 Female, age 94, left hemisphere 34.2
Putamen
nTPM: 36.0
1937 Female, age 91, right hemisphere 38.9
2482 Female, age 94, left hemisphere 37.9
1838 Male, age 80, right hemisphere 36.6
2466 Female, age 79, unknown 36.4
1829 Male, age 74, unknown 36.1
2647 Male, age 75, left hemisphere 33.2
2489 Female, age 72, unknown 32.8
Septal nuclei
nTPM: 38.7
2031 Female, age 72, unknown 46.8
1960 Male, age 74, unknown 44.6
2009 Female, age 91, both hemispheres 39.2
2059 Female, age 85, both hemispheres 38.5
2629 Female, age 94, right hemisphere 36.7
2199 Male, age 80, right hemisphere 33.5
2394 Male, age 61, left hemisphere 31.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 36.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 31.6
Samples: 246

Max nTPM: 79.3
Min nTPM: 17.7
Std nTPM: 9.0
Median nTPM: 30.1
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 79.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 68.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 59.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 56.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 55.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 54.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 53.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 49.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 49.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 47.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.2
Samples: 246

Max nTPM: 73.4
Min nTPM: 19.3
Std nTPM: 8.0
Median nTPM: 35.7
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 73.4
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 62.5
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 57.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 54.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 54.1
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 53.8
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 52.1
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 52.1
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 52.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 51.9
GTEX-1MA7X-0011-R6a-SM-EYYWR 60-69 years, male 51.9
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Brain - Putamen (basal ganglia)
Average nTPM: 29.7
Samples: 205

Max nTPM: 54.9
Min nTPM: 18.4
Std nTPM: 7.3
Median nTPM: 28.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 54.9
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 51.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 50.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 49.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 48.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 48.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 45.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 44.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 43.8
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 42.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 42.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.9
FF:10164-103B2 76 years, female 52.9
Globus pallidus
Scaled Tags Per Million: 42.4
FF:10175-103C4 60 years, female 54.4
FF:10161-103A8 76 years, female 30.3
Nucleus accumbens
Scaled Tags Per Million: 47.6
FF:10037-101F1 23-56 years, mixed 47.6
Putamen
Scaled Tags Per Million: 60.5
FF:10176-103C5 60 years, female 60.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 12.8
Sample A Male 12.8
Sample B Male 14.3
Sample C Female 15.3
Sample D Female 15.9
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 24.9
Min nTPM: 22.4
Sample A Male 24.3
Sample B Male 24.4
Sample C Female 24.9
Sample D Female 22.4
Ventral forebrain
nTPM: 18.4
Samples: 4

Max nTPM: 19.1
Min nTPM: 18.0
Sample A Male 18.0
Sample B Male 19.1
Sample C Female 18.1
Sample D Female 18.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
68546434 Antisense, RP_050120_02_E03, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.9
68546434 Antisense, RP_050120_02_E03, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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